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    <admin>
        <current_status>
            <date>2017-12-13</date>
            <code>REL</code>
            <processing_site>PDBj</processing_site>
        </current_status>
        <sites>
            <deposition>PDBj</deposition>
            <last_processing>PDBj</last_processing>
        </sites>
        <key_dates>
            <deposition>2017-11-07</deposition>
            <header_release>2017-12-13</header_release>
            <map_release>2017-12-13</map_release>
            <update>2017-12-13</update>
        </key_dates>
        <title>Complex structure of Pseudorabies virus glycoprotein B bound by a neutralizing antibody</title>
        <authors_list>
            <author>Yang F</author>
            <author>Peng R</author>
            <author>Gao GF</author>
            <author>Shi Y</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Yang F</author>
                    <author order="2">Peng R</author>
                    <author order="3">Gao GF</author>
                    <author order="4">Shi Y</author>
                    <title>Complex structure of Pseudorabies virus glycoprotein B bound by a neutralizing antibody</title>
                    <journal_abbreviation>Plos Pathog.</journal_abbreviation>
                    <country>US</country>
                    <year>2017</year>
                    <external_references type="DOI">doi:10.1371/journal.ppat.1006777</external_references>
                    <external_references type="ISSN">1553-7374</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-6841</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Pseudorabies virus glycoprotein B in complex with Fab fragments from a neutralizing antibody</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Pseudorabies virus glycoprotein B in complex with Fab fragments from a neutralizing antibody</name>
                <parent>0</parent>
                <details>The Fab fragment was generated by proteolytic cleavage of IgG antibody. The Pseudorabies virus glycoprotein B was expressed using the baculovirus expression system. The two proteins were purified separately and mixed to constitute complex samples in solution.</details>
                <natural_source database="NCBI">
                    <organism ncbi="10345">Suid herpesvirus 1</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="7108">Spodoptera frugiperda</recombinant_organism>
                    <recombinant_cell>Sf9</recombinant_cell>
                </recombinant_expression>
                <molecular_weight>
                    <experimental units="MDa">0.3</experimental>
                </molecular_weight>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">0.02</concentration>
                    <buffer>
                        <ph>8.</ph>
                        <details>20 mM Tris-HCl, pH 8.0
150 mM NaCl</details>
                    </buffer>
                    <staining>
                        <type>NEGATIVE</type>
                        <material>Uranyl acetate</material>
                        <details>The specimen was stained by 1% Uranyl acetate for 1 min and air-dried before data acquisition.</details>
                    </staining>
                    <grid>
                        <model>Homemade</model>
                        <material>COPPER</material>
                        <mesh>300</mesh>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                            <film_topology>CONTINUOUS</film_topology>
                            <film_thickness units="nm">10.0</film_thickness>
                        </support_film>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                            <atmosphere>AIR</atmosphere>
                        </pretreatment>
                    </grid>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI F20</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI EAGLE (4k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/&#8491;^2">30.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>ctfit</name>
                        </software>
                    </software_list>
                </ctf_correction>
                <startup_model type_of_model="OTHER">
                    <details>Newly determined crystal structure of Pseudorabies virus glycoprotein B.</details>
                </startup_model>
                <final_reconstruction>
                    <number_classes_used>1</number_classes_used>
                    <applied_symmetry>
                        <point_group>C3</point_group>
                    </applied_symmetry>
                    <resolution res_type="BY AUTHOR" units="&#8491;">35.0</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>2.0</version>
                        </software>
                    </software_list>
                    <number_images_used>3000</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>RANDOM ASSIGNMENT</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>2.0</version>
                        </software>
                    </software_list>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>ANGULAR RECONSTITUTION</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>2.0</version>
                        </software>
                    </software_list>
                </final_angle_assignment>
                <final_three_d_classification>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>2.0</version>
                        </software>
                    </software_list>
                </final_three_d_classification>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
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        <file>emd_6841.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
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            <col>320</col>
            <row>320</row>
            <sec>320</sec>
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            <x>320</x>
            <y>320</y>
            <z>320</z>
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            <a units="&#8491;">435.2</a>
            <b units="&#8491;">435.2</b>
            <c units="&#8491;">435.2</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
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            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
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            <minimum>-0.009441859</minimum>
            <maximum>0.036231082</maximum>
            <average>0.000062737985</average>
            <std>0.0014707975</std>
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                <source>AUTHOR</source>
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        <label>::::EMDATABANK.org::::EMD-6841::::</label>
        <annotation_details>EM density map</annotation_details>
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    <interpretation>
        <modelling_list>
            <modelling>
                <refinement_protocol>RIGID BODY FIT</refinement_protocol>
                <refinement_space>REAL</refinement_space>
            </modelling>
        </modelling_list>
    </interpretation>
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