2024-03-27 REL PDBj PDBj PDBj 2017-08-10 2018-01-17 2018-01-17 2024-03-27 Ministry of Education, Science and Culture of Japan 17H03648 Japan Ministry of Education, Science and Culture of Japan 16K21472 Japan Nakanishi A Kishikawa J ATP synthase, proton pump, V-ATPase, Bioenergetics, MOTOR PROTEIN Nakanishi A Kishikawa JI Tamakoshi M Mitsuoka K Yokoyama K Nat Commun UK 9 89 89 2018 29311594 doi:10.1038/s41467-017-02553-6 2041-1723 5y60 FULLOVERLAP V/A-type ATPase/synthase from Thermus thermophilus, rotational state 3. V/A-type ATPase/synthase from Thermus thermophilus, rotational state 3. 0 1 2 3 4 5 6 7 8 9 Thermus thermophilus HB8 0.65 V-type ATP synthase alpha chain Thermus thermophilus HB8 HB8 0.06369998 3 LEVO MIQGVIQKIAGPAVIAKGMLGARMYDICKVGEEGLVGEIIRLDGDTAFVQVYEDTSGLKVGEPVVSTGLPLAVELGPGML NGIYDGIQRPLERIREKTGIYITRGVVVHALDREKKWAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEV KPAGEYTVEEPVVVLEDGTELKMYHTWPVRRARPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKTVTQQS LAKWSNADVVVYVGCGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFSV ALMADSTSRWAEALREISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDMSEPVTQSTL RIVGAFWRLDASLAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQLVGPDALQDAE RLVIEVGRIIREDFLQQNAYHEVDAYCSMKKAYGIMKMILAFYKEAEAAIKRGVSIDEILQLPVLERIGRARYVSEEEFP AYFEEAMKEIQGAFKALA Q56403 3.6.3.14 V-type ATP synthase beta chain Thermus thermophilus HB8 HB8 0.053219499999999996 3 LEVO MDLLKKEYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGLDLATTSVSLVEDVA RLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPA NEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRMALT VAEYLAFEHDYHVLVILTDMTNYCEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVTQIPILSMPDDD RTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDHKQVSDQLYSAYANGVDIRKLVAIIG EDALTENDRRYLQFADAFERFFINQGQQNRSIEESLQIAWALLSMLPQGELKRISKDHIGKYYGQKLEEIWGAPQALD Q56404 V-type ATP synthase subunit D Thermus thermophilus HB8 HB8 0.024715565999999998 1 LEVO MSQVSPTRMNLLQRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGPEVVAGAA LGVPPLEGVEAEVENVWGSKVPRLKATFPDGALLSPVGTPAYTLEASRAFRRYAEALIRVANTETRLKKIGEEIKKTTRR VNALEQVVIPGIRAQIRFIQQVLEQREREDTFRLKRIKGKIEAREAEEEGGRPNPQVEIGAGL O87880 V-type ATP synthase subunit F Thermus thermophilus HB8 HB8 0.011294904 1 LEVO MAVIADPETAQGFRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLPDPERAVERLMRGRDLPVLLPIAGLKEA FQGHDVEGYMRELVRKTIGFDIKL P74903 V-type ATP synthase, subunit (VAPC-THERM) Thermus thermophilus HB8 HB8 0.013166218 2 LEVO MTGGLVLNAISRAGGAMGGLGLIKSLAEKEKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAE TEALLARYRERAEAEAKAVREKAMARLDEAVALVLKEVLP Q5SIT5 V-type ATP synthase subunit E Thermus thermophilus HB8 HB8 0.020699692999999998 2 LEVO MSKLEAILSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVL EEVRRRVREALEALPQKPEWPEVVRKLALEALEALPGAKALVANPEDLPHLEAMARERGVELQAEPALRLGVRAVGAEGK TQVENSLLARMDRAWDAMSSKVAQALWG P74901 V-type ATP synthase subunit C Thermus thermophilus HB8 HB8 0.03596857 1 LEVO MADDFAYLNARVRVRRGTLLKESFFQEALDLSFADFLRLLSETVYGGELAGQGLPDVDRAVLRTQAKLVGDLPRLVTGEA REAVRLLLLRNDLHNLQALLRAKATGRPFEEVLLLPGTLREEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAVLRETQD LARVEALLAKRFFEDVAKAAKGLDQPALRDYLALEVDAENLRTAFKLQGSGLAPDAFFLKGGRFVDRVRFARLMEGDYAV LDELSGTPFSGLSGVRDLKALERGLRCVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRLRLLARRAYFGLPRAQVEEEV VCP P74902 V-type ATP synthase subunit I Thermus thermophilus HB8 HB8 0.072204289 1 LEVO MIAPMEKLVLAGPKGRAKELLQSLQQAGVVHLETLRPEALSAYQLSPEERAELRRWEAVSAGAEHTLSLLGLEAEPARPF PEGLEAAEKALSPIQAHAEGLTRQKQELEEELALAQAYLEPLERLAALAHGLDKSPFLRVIPFLLTEKELPLVEEALRKA LEDRYLLAHEAYAGGVAALVVVHRKEVDQAKAALSRAGVAELRLPGALGELPLSEAARRLKERAEAAPRELSEVRQHLAK LARESASTLQSLWTRAQDEVARLKALEELASGRFGFALLGYVPVKAKPKVEEALARHKESVVYAFEPVDEHHEADRIPVV LDNPPWAKPFELLVSFLNTPKYGTFDPTPVVPVFFPFWFGMIVGDIGYALLFYLVGRWLSGYVKRNEPLVIDLFALKLKP QVIGKLVHILNWMVFWTVVWGVIYGEFFGTFLEHLGVFGTPEHPGLIPILIHRIDTAKTANLLILLSVAFGVVLVFFGLA LRAYLGLKHRHMAHFWEGVGYLGGLVGVLALAASYLGNLQAGWLQGLMYLGFGVFLLAVLMSRIWLMIPEIFTQAGHILS HIRIYAVGAAGGILAGLLTDVGFALAERLGLLGVLLGLLVAGVLHLLILLLTTLGHMLQPIRLLWVEFFTKFGFYEENGR PYRPFKSVREAQ Q5SIT6 V-type ATP synthase, subunit K Thermus thermophilus HB8 HB8 0.009841714 12 LEVO MKKLLVTVLLAVFGALAFAAEEAAASGGLDRGLIAVGMGLAVGLAALGTGVAQARIGAAGVGAIAEDRSNFGTALIFLLL PETLVIFGLLIAFILNGRL Q5SIT7 ADENOSINE-5'-DIPHOSPHATE 0.000427201 2 ADP singleParticle particle 0.027 8.0 100.0 NaCl sodium chloride 20.0 Tris-HCl 0.1 EDTA 0.003 LMNG Quantifoil R2/2 MOLYBDENUM 200 CARBON HOLEY GLOW DISCHARGE 60 ETHANE 100 277 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.7 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON II (4k x 4k) INTEGRATING 1.0 26.0 1 C1 7.5 FSC 0.143 CUT-OFF RELION 2.1b 13851 OTHER RELION 2.0 OTHER RELION 2.1b RELION 2.1b