2024-10-30 REL PDBj PDBj PDBj 2017-07-09 2017-09-27 2017-09-27 2024-10-30 Li Z Ge X Mycobacterium smegmatis ribosome, rRNA, rprotein, RIBOSOME Li Z Ge X Zhang Y Zheng L Sanyal S Gao N Protein Cell CN 9 384 388 2018 28875450 doi:10.1007/s13238-017-0456-9 1674-8018 5xym FULLOVERLAP Large subunit of Mycobacterium smegmatis ribosome Large subunit of Mycobacterium smegmatis ribosome 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 50S ribosomal protein L32 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.006467718999999999 1 LEVO MAVPKRRMSRANTRSRRAQWKAEAPGLVTVSVAGQQRKVPRRLLKAARLGLVDLDKR A0R3I9 50S ribosomal protein L33 2 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.00661564 1 LEVO MARNEIRPIVKLRSTAGTGYTYVTRKNRRNDPDRIVLRKYDPVLRRHVEFREER A0R551 50S ribosomal protein L34 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.00552258 1 LEVO MAKGKRTFQPNNRRRARVHGFRLRMRTRAGRAIVANRRSKGRRALTA A0R7K0 50S ribosomal protein L35 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.007298504999999999 1 LEVO MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPTKRTRRLDGRTTVSAADNSRINKLLNG A0QYU7 50S ribosomal protein L36 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.004341277 1 LEVO MKVNPSVKPICDKCRVIRRHGRVMVICSDPRHKQRQG A0QSL4 23S RNA Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 1.0262834379999999 1 UUGUAAGUGUUUAAGGGCGCAUGGUGGAUGCCUUGGCACUGGGAGCCGAUGAAGGACGUAGGAGGCUGCGAUAAGCCUCG GGGAGCUGUCAACCGAGCGUUGAUCCGAGGAUGUCCGAAUGGGGAAACCCGGCACGAGUGAUGUCGUGUCACCAGGCGCU GAAUAUAUAGGCGUCUGGGGGGAACGCGGGGAAGUGAAACAUCUCAGUACCCGUAGGAAGAGAAAACAAAAUGUGAUUCC GUGAGUAGUGGCGAGCGAAAGCGGAGGAUGGCUAAACCGUAUGCAUGUGAUACCGGGUAGGGGUUGUGUGUGCGGGGUUG UGGGACCUAUCUUUCCGGCUCUACCUGGCUGGAGGGCAGUGAGAAAAUGUUGUGGUUAGCGGAAAUGGCUUGGGAUGGCC UGCCGUAGACGGUGAGAGCCCGGUACGUGAAAACCCGACGUCUGUCUUGAUGGUGUUCCCGAGUAGCAGCGGGCCCGUGG AAUCUGCUGUGAAUCUGCCGGGACCACCCGGUAAGCCUGAAUACUUCCCAGUGACCGAUAGCGGAUUAGUACCGUGAGGG AAUGGUGAAAAGUACCCCGGGAGGGGAGUGAAAGAGUACCUGAAACCGUGCGCUUACAAUCCGUCAGAGCCCUCGACGUG UCGUGGGGUGAUGGCGUGCCUUUUGAAGAAUGAGCCUGCGAGUCAGGGACAUGUCGCGAGGUUAACCCGGGUGGGGUAGC CGCAGCGAAAGCGAGUCUGAAUAGGGCGUAUCCACACAAGAGUGUGUGGUGUAGUGGUGUGUUCUGGACCCGAAGCGGAG UGAUCUACCCAUGGCCAGGGUGAAGCGCGGGUAAGACCGCGUGGAGGCCCGAACCCACUUAGGUUGAAGACUGAGGGGAU GAGCUGUGGGUAGGGGUGAAAGGCCAAUCAAACUCCGUGAUAGCUGGUUCUCCCCGAAAUGCAUUUAGGUGCAGCGUCGC AUGUUUCUUGCCGGAGGUAGAGCUACUGGAUGGCCGAUGGGCCCCACAGGGUUACUGACGUCAGCCAAACUCCGAAUGCC GGUAAGUCCAAGAGUGCGGCAGUGGGACGGCGGGGGAUAAGCUCCGUGCGUCGAGAGGGAAACAGCCCAGAUCGCCGGCU AAGGCCCCUAAGCGUGUGCUAAGUGGAAAAGGAUGUGCAGUCGCGAAGACAACCAGGAGGUUGGCUUAGAAGCAGCCACC CUUGAAAGAGUGCGUAAUAGCUCACUGGUCAAGUGAUUGUGCGCCGAUAAUGUAGCGGGGCUCAAGCACACCGCCGAAGC CGCGGCAGCCAACGUGUUGGCUGGGUAGGGGAGCGUCCUGCAUCCGGUGAAGCCGCCGAGUGAUCGAGUGGUGGAGGGUG UGGGAGUGAGAAUGCAGGCAUGAGUAGCGAUUAGGCAAGUGAGAACCUUGCCCGCCGAAAGACCAAGGGUUCCUGGGCCA GGCCAGUCCGCCCAGGGUGAGUCGGGACCUAAGGCGAGGCCGACAGGCGUAGUCGAUGGACAACGGGUUGAUAUUCCCGU ACCCGUGUAUGUGCGUCCAUGAUGAAUCAGCGGUACUAACCAUCCAAAACCACCGUGACCGCACCUUUCGGGGUGUGGCG UUGGUGGGGCUGCAUGGGACCUUCGUUGGUAGUAGUCAAGCGAUGGGGUGACGCAGGAAGGUAGCCGUACCGGUCAGUGG UAAUACCGGGGUAAGCCUGUAGGGAGUCAGAUAGGUAAAUCCGUCUGGCAUAUAUCCUGAGAGGUGAUGCAUAGCCGAGU GAGGCGAAUUCGGUGAUCCUAUGCUGCCGAGAAAAGCCUCUAGCGAGGACAUACACGGCCCGUACCCCAAACCAACACAG GUGGUCAGGUAGAGAAUACUAAGGCGUACGAGUGAACUAUGGUUAAGGAACUCGGCAAAAUGCCCCCGUAACUUCGGGAG AAGGGGGACCCACAUGGCGUGUAAGCCUUUACGGCCCAAGCGUGAGUGGGUGGCACAAACCAGUGAGAAGCGACUGUUUA CUAAAAACACAGGUCCGUGCGAAGUCGCAAGACGAUGUAUACGGACUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAC CCGUUAACUCCCUUUGGGGGUGAAGCGGAGAAUUUAAGCCCCAGUAAACGGCGGUGGUAACUAUAACCAUCCUAAGGUAG CGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAACGACUUCUCAACUGUCUCAACCAUAGACUCGGCGA AAUUGCACUACGAGUAAAGAUGCUCGUUACGCGCGGCAGGACGAAAAGACCCCGGGACCUUCACUACAACUUGGUAUUGG UGCUCGAUACGGUUUGUGUAGGAUAGGUGGGAGACUGUGAAGCUCACACGCCAGUGUGGGUGGAGUCGUUGUUGAAAUAC CACUCUGAUCGUAUUGGGCCUCUAACCUCGGACCGUAUAUCCGGUUCAGGGACAGUGCCUGGUGGGUAGUUUAACUGGGG CGGUUGCCUCCUAAAAUGUAACGGAGGCGCCCAAAGGUUCCCUCAACCUGGACGGCAAUCAGGUGUUGAGUGUAAGUGCA CAAGGGAGCUUGACUGCGAGACGGACAUGUCGAGCAGGGACGAAAGUCGGGACUAGUGAUCCGGCACCUCUGAGUGGAAG GGGUGUCGCUCAACGGAUAAAAGGUACCCCGGGGAUAACAGGCUGAUCUUCCCCAAGAGUCCAUAUCGACGGGAUGGUUU GGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGGAGCAGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCAC GCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCUCUAUCCGCCGCGCGCGUCAGAAGCUUGAGGAAACCUGUCCCU AGUACGAGAGGACCGGGACGGACGAACCUCUGGUAUACCAGUUGUCCCACCAGGGGCACGGCUGGAUAGCCACGUUCGGA CAGGAUAACCGCUGAAAGCAUCUAAGCGGGAAACCUCUUCCAAGACCAGGCUUCUCACCCUCUAGGAGGGAUAAGGCCCC CCGCAGACCACGGGAUUGAUAGACCAGACCUGGAAGCCUAGUAAUAGGUGCAGGGAACUGGCACUAACCGGCCGAAAACU UACAACACCCCAUAAUCGUUGUAAGAAGAAAACAUUGACGCACC 5S RNA Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.038038777 1 GUUACGGCGGUCCAUAGCGGCAGGGAAACGCCCGGUCCCAUCCCGAACCCGGAAGCUAAGCCUGCCAGCGCCGAUGAUAC UACCCUUCCGGGUGGAAAAGUAGGACACCGCCGAACAC CP000480.1 50S ribosomal protein L2 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.030425945 1 LEVO MGIRKYKPTTPGRRGASVSDFAEITRSTPEKSLVRPLHGKGGRNAHGRITTRHKGGGHKRAYRVIDFRRHDKDGVNAKVA HIEYDPNRTANIALLHYLDGEKRYIIAPQGLKQGDVIESGANADIKPGNNLPLRNIPAGTVIHAVELRPGGGAKLARSAG VSIQLLGKEGTYAALRMPSGEIRRVDVRCRATVGEVGNAEQSNINWGKAGRMRWKGKRPTVRGVVMNPVDHPHGGGEGKT SGGRHPVSPWGKPEGRTRKPNKPSDKLIVRRRRTGKKR A0QSD4 50S ribosomal protein L3 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.023011392999999998 1 LEVO MARKGILGTKLGMTQVFDENNKVVPVTVVKAGPNVVTRIRTTERDGYSAVQLAYGEISPRKVIKPVAGQFAAAGVNPRRH VAELRLDDEAAVAEYEVGQELTAEIFSDGAYVDVTGTSKGKGFAGTMKRHGFRGQGAAHGAQAVHRRPGSIGGCATPGRV FKGTRMSGRMGNDRVTTQNLKVHKVDAENGVLLIKGAIPGRNGGLVVVRSAIKRGEK A0QSD1 50S ribosomal protein L4 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.022920949 1 LEVO MTLKVDVKTPAGKTDGSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRARQGSTR APQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNDRIHAVTELVEGQTPSTKSAKTFLGTLTENKKVLVVIGR TDEVGAKSVRNLPGVHVISPDQLNTYDVLNADDVVFSVEALNAYISANSKEGASV A0QSD2 50S ribosomal protein L5 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.021152328 1 LEVO MTTTEKALPRLKQRYREEIREALQQEFNYANVMQIPGVVKVVVNMGVGDAARDAKLINGAINDLALITGQKPEVRRARKS IAQFKLREGMPIGARVTLRGDRMWEFLDRLISIALPRIRDFRGLSPKQFDGTGNYTFGLNEQSMFHEIDVDSIDRPRGMD ITVVTTATNDAEGRALLRALGFPFKEN A0QSG1 50S ribosomal protein L6 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.019483361 1 LEVO MSRIGKQPVPVPSGVDVTINGQNLSVKGPKGTLTLDVAEPISVSRAEDGAIVVTRPDDERRSRSLHGLSRTLIANLVTGV TEGYTQKMEIFGVGYRVQLKGQNLEFALGYSHPVLIEAPEGITFAVESPTKFSVSGIDKQKVGQISAVIRRLRRPDPYKG KGVRYEGEQIRRKVGKTGK A0QSG4 50S ribosomal protein L9 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.015949253 1 LEVO MKLILTAEVEHLGAAGDTVEVKDGYGRNYLLPRGLAIVASRGAERQAEEIRRARESKVIRDIEHANELKTALEGLGDVTL SVNAAGDTGKLFGSVTAADVVNAIKKAGGPNLDKRTVQLAKAHIKSVGTHPVTVKLHTGVEAKVSLNVVAQ A0R7F6 50S ribosomal protein L13 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.016146689 1 LEVO MPTYTPKAGDTTRSWYVIDASDVVLGRLASAAATLLRGKHKPTFTPNVDGGDFVIVINADKIAVSGDKLTKKFAYRHSGY PGGLRKRTIGELLEKHPTRVVENAIIGMLPHNKLGRQIQKKLKVYAGPDHPHAAQQPIPFEIKQVAQ A0QSP8 50S ribosomal protein L14 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.013400625 1 LEVO MIQQESRLKVADNTGAKEILCIRVLGGSSRRYAGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTVKERRRADGSYIKFD ENAAVIIKNDNDPRGTRIFGPVGRELREKKFMKIVSLAPEVL A0QSF9 50S ribosomal protein L15 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.015602244 1 LEVO MSVIKLHDLKPAPGEKKAKTRVGRGEGSKGKTAGRGTKGTKARKNVPVMFEGGQMPIHMRLPKLKGFKNRFRTEYQVVNV GDINKAFPQGGTVGVDELVAKGLVRKNSLVKVLGDGKLTVKVDVTANKFSGSAREAITAAGGSATEL I7G436 50S ribosomal protein L16 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.01577424 1 LEVO MLIPRKVKHRKQHHPEQRGIASGGTSVSFGDYGIQALEHAYITNRQIESARIAINRHIKRGGKVWINIFPDRPLTKKPAE TRMGSGKGSPEWWVANVKPGRVLFELSYPDEKTARDALTRAIHKLPIKARIVTREEQF A0QSD8 50S ribosomal protein L17 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.021892245999999997 1 LEVO MPKPTKGPRLGGSSSHQSALLANLATSLFEHGRIKTTEPKARALRPYAEKLITHAKKGALHNRREVMKKIRDKDVVHTLF AEIGPFYADRNGGYTRIIKVENRKGDNAPMAVIELVREKTVTDEANRARRAAASQAKADERADEKADEKAEETVEETTEA PAEESTEAAAEETVEETTEAPAEESTEAAEESEAKDDTK A0QSL9 50S ribosomal protein L18 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.013711727999999998 1 LEVO MAHKPVGQNISEVRRNARLRRHARLRKKVAGTAEVPRLVVNRSARHIHVQLVNDLNGTTLAAASSIEADVRAIDGDKKAH SVRVGQLIAERAKAAGVETVVFDRGGYTYGGRIAALADAAREAGLKF I7FGD9 50S ribosomal protein L19 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.012892806 1 LEVO MNTLDFVDQASLRDDIPTFSPGDTVNVHVKVIEGSKERIQVFKGVVIRRQGGGISETFTVRKESYGVGVERTFPVHSPNI DHIDVLTRGDVRRAKLYYLRELRGKKAKIKEKR A0QV42 50S ribosomal protein L20 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.014494693 1 LEVO MARVKRALNAQKKRRTVLKASKGYRGQRSRLYRKAKEQQLHSLTYAYRDRRARKGEFRKLWISRINAAARANDITYNRLI QGLKAAGVEVDRKNLAELAVSDPAAFTALVDVARAALPEDVNAPSGEAA A0QYU6 50S ribosomal protein L21 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.011055894 1 LEVO MATYAIVKTGGKQYKVAAGDVVKVEKLDSEPGASVSLPVALVVDGANVTSKADDLAKVAVTAEVLEHTKGPKIRIHKFKN KTGYHKRQGHRQQLTVLKVTGIK A0R151 50S ribosomal protein L22 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.0163536 1 LEVO MSTVTEFPSATAKARYVRVSATKARRVIDLVRGKSVEEALDILRWAPQAASEPVAKVIASAAANAQNNEGLDPSTLVVAT VYADEGPTAKRIRPRAQGRAFRIRKRTSHITVIVESRPPKQKGASAASARSRRAQGSKAAATKKSAETKEGSE A0QSD6 50S ribosomal protein L23 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.011047835999999998 1 LEVO MATITDPRDIILAPVISEKSYGLIEDNVYTFVVHPDSNKTQIKIAIEKIFDVKVDSVNTANRQGKRKRTRTGFGKRKSTK RAIVKLAAGSKPIDLFGAPA A0QSD3 50S ribosomal protein L24 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.011228946 1 LEVO MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSANERGASSGGIVTQEAPIHVSNVMVVDSDGKP TRVGYRIDDETGKKVRIAKTNGKDI A0QSG0 50S ribosomal protein L25 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.022571078 1 LEVO MAKTANIPNKLTANVRTRTGKGASRQARRDGKVPAVLYGHGTDPQHLELNARDFAAVLRSHGTNAILTLDIEGTEQLALT KALDVHPIRRNIQHADLLVVQRGEKVTVEVTVLVEGDATPGTLVTQDANTIEIEAEALSIPEQLTVSVEGVEAGTQITAG QISLPEGVNLISDPELLVVNVVEAPSAEALEEEGAGETGAAEAPAEEAPAEEPAE I7GFB2 50S ribosomal protein L27 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.009249582 1 LEVO MAHKKGASSSRNGRDSAAQRLGVKRFGGQVVKAGEILVRQRGTHFHPGVNVGRGGDDTLFALAPGAVEFGAKRGRKTVNI VPVARPEA A0R150 50S ribosomal protein L28 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.006891015999999999 1 LEVO MAAVCDICGKGPGFGKSVSHSHRRTSRRWNPNIQPVRAVTRPGGNKQRINACTSCIKAGKVSRA I7FJ52 50S ribosomal protein L29 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.008790895 1 LEVO MAVGTTPGELRELTDDELKDKLRESKEELFNLRFQMATGQLSNNRRLRTVRQEIARVYTVLRERELGLASGPAGEES A0QSD9 50S ribosomal protein L30 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.007022146999999999 1 LEVO MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEVGK A0QSG7 Uncharacterized protein bL37 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.0028413749999999997 1 LEVO MAKRGRKKRDRKHSKANHGKRPNA A0QTP4 MAGNESIUM ION 2.4305e-05 146 MG singleParticle particle 7.6 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) 2.0 1 3.08 FSC 0.143 CUT-OFF 71351 PROJECTION MATCHING ANGULAR RECONSTITUTION