2024-03-27 REL PDBj PDBj PDBj 2017-07-08 2017-08-30 2017-08-30 2024-03-27 Small subunit of Trichomonas vaginalis ribosome Li Z Guo Q Trichomonas vaginalis ribosome, rRNA, rprotein, RIBOSOME Li Z Guo Q Zheng L Ji Y Xie YT Lai DH Lun ZR Suo X Gao N Cryo-EM structures of the 80S ribosomes from human parasites Trichomonas vaginalis and Toxoplasma gondii Cell Res. CN 27 1275 1288 2017 28809395 doi:10.1038/cr.2017.104 1748-7838 5xyi FULLOVERLAP Small subunit of Trichomonas vaginalis ribosome Small subunit of Trichomonas vaginalis ribosome 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 Trichomonas vaginalis 18S Trichomonas vaginalis 0.508656188 1 ACUUGGUUGAUCCUGCCAAGGAAGCACACUUAGGUCAUAGAUUAAGCCAUGCAAGUGUUAGUUCAGGUAACGAAACUGCG AAUAGCUCAUUAAUACGCUCAGAAUCUAUUUGGCGGCGACCAACAGGUCUUAAAUGGAUAGCAGCAGCAACUCUGGUGCU AAUACAUGCGAUUGUUUCUCCAGAUGUGAAUUAUGGAGGAAAAGUUGACCUCAUCAGAGGCACGCCAUUCGACUGAGUGA CCUAUCAGCUUGUACUUAGGGUCUUUACCUAGGUAGGCUAUCACGGGUAACGGGCGGUUACCGUCGGACUGCCGGAGAAG GCGCCUGAGAGAUAGCGACUAUAUCCACGGGUAGCAGCAGGCGCGAAACUUUCCCACUCGAGACUUUCGGAGGAGGUAAU GACCAGUUCCAUUGGUGCCUUUUGGUACUGUGGAUAGGGGUACGGUUUUCCACCGUACCGAAACCUAGCAGAGGGCCAGU CUGGUGCCAGCAGCUGCGGUAAUUCCAGCUCUGCGAGUUUGCUCCCAUAUUGUUGCAGUUAAAACGCCCGUAGUCUGAAU UGGCCAGCAAUGGUCGUACGUAUUUUUACGUUCACUGUGAACAAAUCAGGACGCUUAGAGUAUGGCCACAUGAAUGACUC AGCGCAGUAUGAAGUCUUUGUUUUCUUCCGAAAACAAGCUCAAUGAGAGCCAUCGGGGGUAGAUCUAUCUCAUGACGAGU GGUGGAAUACUUUGACUCAUGAGAGAGAAGCUGAGGCGAAGGCGUCUACCUAGAGGGUUUCUGUCGAUCAAGGGCGAGAG UAGGAGUAUCCAACAGGAUUAGAGACCCUGGUAGUUCCUACCUUAAACGAUGCCGACAGGAGUUUGUCAUUUGUUAAUGG CAGAAUCUUUGGAGAAAUCAUAGUUCUUGGGCUCUGGGGGAAAUACGACCGCAAGGCUGAAACUUGAAGGAAUUGACGGA AGGGCACACCAGGGGUGGAGCCUGUGGCUUAAUUUGAAUCAACACGGGGAAACUACCCAGGACCAGAUGUUUUUUAUGAC UGACAGGCUUCGGGUCUUUCAGGAUAUUGUUUUUGGUGGUGCAUGGCCGUUGGUGGUGCGUGGGUUGACCUGUCUAGCGU UGAUUCAGCUAACGAGCGAGAUUAUCGCCAAUUAUUUACUUUGCCGAAGUCCUUCGGUUAAAGUUCUAAUUGGGACUCCC UGCGAUUUUAGCAGGUGGAAGAGGGUAGCAAUAACAGGUCCGUGAUGCCCUUUAGAUGCUCUGGGCUGCACGCGUGCUAC AAUGUUAGGAUCAAUAGGACUGCGAGCCUGAGAGGGUGCGCUACUCUUAUAAUCCCUAACGUAGUUGGGAUUGACGUUUG UAAUCAGCGUCAUGAACCAGGAAUCCCUUGUAAAUGUGUGUCAACAACGCACGUUGAAUACGUCCCUGCCCUUUGUACAC ACCGCCCGUCGCUCCUACCGAUUGGAUGACUCGGUGAAAUCACCGGAUGCUUACGAGCAGAAAGUGAUUAAAUCACGUUA UCUAGAGGAAGGAGAAGUCGUAACAAGGUAACGGUAGGUGAACCUGCCGUUGGAUCA 40S ribosomal protein SA Trichomonas vaginalis 0.028584676 1 LEVO MTTAANADREAVIKMMLAAKVYLGSTNLSFGMKPYVFTCRKDGTHVINLAMTYEKIKLAARMIYAVEEPKDVLAISTKSF GTRAVHKFAEFLGANYVEQRFTPGLFTNYSIKNFCEPRLMIVCDPNTDSQAVHEAAYANIPCIALCDTDAHLDYVDCVIP CNTKNKNSMGLVMWLLTREVLRLRGALTRTQEWSVLPDLFFYRDAADEAKIAEALEAEGEETVSEEGAIINAAVPKAEIK AGATNEEWENKQEWDA A2EFE7 Ribosomal protein S3Ae, putative Trichomonas vaginalis 0.028085471 1 LEVO MGASKQQRPKTSKKIKQDSFIKKEWRHVMVPAYFTGKHDIGVTVSNKCARGRVPMDYVNNRVWELSHADMVNDLSHAYRL FSWRSIAAGSEVYTQFAGMRLTHDKLDSIMRKYRTLINASVDAKTADGFILRLFTVGFTKKLANSHKNHTYANSHKARQV RDVMVKCLTDACESNGVEQLCKDFVDEKIENEIVEKCKQICQIEGVYITKVKVIKAPALSNEQVKVLKISKDAAQLSLAP TERPAEE A2G9Z8 Uncharacterized protein Trichomonas vaginalis 0.030083736 1 LEVO MSTQQAAPVEAQAQAPQEQQQLRGEMRGRREGRGPRGPRAPRGQQKGGWQPRTKLGRLVKSGKIKSIEEIFYHAIPIKEA EIVEHLLGEDLKDEIMKIMPVQKQTRAGQRTRFKAIAAVGDGKGHIGLGIKTAAEVANAIKGATIYAKLSILPVRRGYWG NKIGLPHTVPNTVTGKCGSIRMRLIPAPRGSGIVAGTAAKKLLTMAGFEDLFTSSLGHTKTTFNFLVATYKAMEETFKFL TPDQWEDRAFEEHPFVKNSDWLHGKKKVDAEE A2EHK3 Ribosomal protein S3, putative Trichomonas vaginalis 0.024505658 1 LEVO MKAQRCTKVRRIIETGLFYAELNELLTRELTKEGYGGCEVRQTPTRTEIIIKAANTKEFVDNHGRRLQEVRMMIQKRWRL KEDSLEIFIDRIQRKGLSALNQLESLRYKLIARIPARRAAYSIIRFVMDAGARGCEVAISGKLRGARASTSKYKEGYMVK SGDVTKQFVTQAVGHIPMKQATIGIRVLIMLAQDPSGISGPKESQPDVIKVHEAKD A2DIM3 40S ribosomal protein S4 Trichomonas vaginalis 0.028589561 1 LEVO MPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKRRLVKVDGKVRTNY RYPTGLMDVIGLGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPSVRVHDAL KFNIKTGEVESVIKFKVGDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIGENEHPLISLPA REGVRPSILEGINQE A2FC75 40s ribosomal protein S5-B, putative Trichomonas vaginalis 0.021672888999999997 1 LEVO MEGVKLFGKYDYSDVDFSQLDPALVDYISVHEKQHVMVPHTAGRYVHKRFQKVSCPLVERLCNHLMSRGRNTGKKLLAIR IVEHAFDIIALSTGQNPIVTFVKGVQYCGAREDSTRIGVGGTVRRQACDVSPLRRIDQALSLITEGVRKAAFRSSRNIAE CLADELIAASNNDQTSYACRKKDELERIAKSNR A2E4S6 40S ribosomal protein S6 Trichomonas vaginalis 0.024583883 1 LEVO MRITLAYPENGTQVVVDIDDPAALNALYEKRVGQDIEGEKLGGQFKGYLFRIGGGFDKQGFPMKQGVITPRRIRLLLKTG ASCYRPRKDGERKRKTVRGCIISDEISALHCVVLQKGEKEIDGLTTTVVPRRFGPKRASTLRAMFGITDSKFDASKLVLK REVKPGKFTSPKVQRLITARRVARKNRMLKERKEKREATKKKAEQYQALLKQQQKQ A2DEJ9 40S ribosomal protein S7, putative Trichomonas vaginalis 0.018708568 1 LEVO MSETVTAAFNEIAAGKPELKDLKIESVKEVKSEGATVLVITVPYKQIKAFQSAQATFLPDLEKKLNAQICIIGKHRAFPK TPEHGRRFKAIRNYGRTLRSVNDAILDDLVFPTAIVGKRVHYDVNGKQVTRVILDKHDATRVEERLSGFAAAYNRLTGIV SVFEVAQN A2G5X6 40S ribosomal protein S8 Trichomonas vaginalis 0.022118488 1 LEVO MGITRMGDLKHTKSGARQVAWRKKRNFLAGRPSAQTRIGEKRIHAVRVRGGNLKMRALRLETGTFAWASENCTRKTRILN VTYHPADNDLVRTNTLARGSVVSIDAAPFKQWYERQFGKALGKSQYVKPEKVTDKMTQRWAANKDGGVVAPELVAEFDQG RLLAVITSRPGQCGRADGYILEGEELAFYSDKIAKKK A2E1L5 Uncharacterized protein Trichomonas vaginalis 0.021811294999999998 1 LEVO MSSRNFSRTFKKPMRPYEKERMHKELQVVGEYGLKNKREIWRVSYTLSKIRHAARELLTLPENDSKRIFEGAALLRRLTK LGVLDESKQKLDYVLSLTVNDLMDRRLQTQVHKRALANSVHHARTLVSHRHISVENQLVNQPAFLVWKESEKNIKYADTS VMTTEKLGRKKRMRAHAQTKKADEE A2DNY3 Plectin/S10 domain containing protein Trichomonas vaginalis 0.016251438 1 LEVO MYMPTAIRRRILRCLFENGVLCVSDIQSGTHEELDCLNIYPYQIGRAFVTKGFCIKTYAWSHAYYTLTDKGIEYLRNYFG LPANAAPATLREAEAKVLETRRDRPQGRGPRRFGNGPRGDRPQRGGFRGPRREQAEQPQQE A2EBA2 Uncharacterized protein Trichomonas vaginalis 0.018015252 1 LEVO MSTVQTERAFQKQPQLFLASKKHANAEKKQRYVKSIGLKIETPKTAEEREYIDAKCPFTGTVSIRGRVLRGVVVSTKMRR TIIIRRDYLQWIRKYKRFEKRHTKIPAHISPAFLVKEGDLVTVAECRPLSKTVHFNVIHVKPAAVGADKRQFRVF A2DHU8 Ribosomal protein L7Ae, putative Trichomonas vaginalis 0.013714954 1 LEVO METVIEHGLHQINLSGNVAKGIRCTIKAILKGKARLVLLADDCENKDYKNLVAGLCKKHNVKLQAVEKKELLGRALGLTH FKADGSVRRQMNCGACAIIRYGSVDTQELDEFRKAFDPAVEEQA A2FA40 40S ribosomal protein S13, putative Trichomonas vaginalis 0.017071030999999997 1 LEVO MGRLHSQGKGISSSTCPYRRSAPHWLQLSAENCVQMICDYAKKGVRPSQIGALLRDRNGVGMVRAVTGVKVLRILKANGL APALPEELYHLIKKATNVRKHLEHAKHDVDGKYRLILIESRIHRLTRYYKTRRVLAPNWKYNAQTASALVA A2D9L2 Ribosomal protein S14 Trichomonas vaginalis 0.016689012 1 LEVO MSAPEAAPAAPADQTATTGKKDVQLGPVKRDGEIVMGVAHIYASKNDTFVHVTDLSGSETLARCTGGIAVRAQRDEATPY AAMLAAQAVAARLKELGVDGVHIKFRGEGGSSRRLPAQGAQSALRALARAGVKIGRIEDVTPLPHDSTRRKGGRRGRRL Q76KS8 Ribosomal protein S19, putative Trichomonas vaginalis 0.016286079999999998 1 LEVO MSASGKFAQRNYTYRGKTLDDLRAMELKDFVELLPTKRRRFISRSFDLKHVHLIEKLKKARQAVEGQAGVRPPVVKTHLR HMVILPEFVDNVIGIYDGHVFFEVQIKPEMIGHVLADFAPSKKVVKHSKAGVGATRSSSATSLK A2DVD8 40S ribosomal protein S16, putative Trichomonas vaginalis 0.015626175 1 LEVO MKSVQVFGRKKTATAVAYCCEGSGLIKLNGTPINMVSSETLRAKILEPLQLIGEESWGNLDIRVRVHGGGHVAQVYAIRQ AVAKAIVAYYQKYVDEATKTEIKNTLLGYDRTLLVADPRRMEPKKFGGQGARVRRQMSYR A2D919 40S ribosomal protein S17-B, putative Trichomonas vaginalis 0.014964433999999999 1 LEVO MGRIRTKTTKRAARLVIERFYGQLSFDFQDNKRVCDAVADIPSKRMRNKIAGYVTHLMRRLERGPVRGISFKLQEQEREK RDNWMPTTSKLNVPKILVDPETKEMLAAIGLGEMEGVEVFTRRAGARQQ A2DPS3 Ribosomal protein S13p/S18e, putative Trichomonas vaginalis 0.017564523 1 LEVO MPIEVTDPAAFRDMVRMLSTNVDGRRPLYLALTNISGIGRRFAYAVVRRAGLDPLRRAGTLTPKEEELIVSIIQNPTEHQ IPVWMLNRRFDRATGQNTHWVATDLGANIRAEIERMKKMRMKRGIRHGLGLKVRGQCTKSTGRRGGALGVERKKD A2DTR8 Ribosomal protein S19e, putative Trichomonas vaginalis 0.016584187999999996 1 LEVO MIGGKTGHKGFQAREISADVFVNALAKHFQENRIVKPPEWADLVKTAALKQMAPSNQNWFYTRAAAVIRQIYMHHDASLS GLSFHYGANLKAVTMPKHHHNASRKVIRSILQQLEKSDLVKVGEKGRQLTPKGQRLLDQVATSCGKKQ A2EG54 Ribosomal protein S10p/S20e, putative Trichomonas vaginalis 0.013933201 1 LEVO MADHVVPTGDEKKEIIEDLPVQKIRLTITSSKLPNLQRVVGNLMGKLKKGNLEVRGPIPMPRRRLRITTRRAPCGNGTET YDHFELRIYKRVIDFQGTAEAVKQVTQIALEPDVHVEVSVITE A2FDE0 40S ribosomal protein S21 Trichomonas vaginalis 0.009853129999999998 1 LEVO MQNDAGEIVDMLIPRKCMATDRLIPPHDHASVQIQIAKVNDDGLPTGEFETVVFSGYVRALGESDYALNRIATEKGLLTG VYRNEAHKQ A2FFS8 Ribosomal protein S15a Trichomonas vaginalis 0.014583213 1 LEVO MVRTSVLADALKAITNAERRGMRQVLIRPSSKVIIAFLKVMASRNYIGDFEVIDDHRSGKIVINLLGRLNKCVAICPRFD VGLGDLEMWQAKLLPSRQFGYVVLSTDKGIMDHEEARKHNAGGKILGMFF A2DLW4 40S ribosomal protein S23, putative Trichomonas vaginalis 0.015592456999999999 1 LEVO MGKSKACGRLAARKLRLAHKSNLWASNAYRRSLGTSIYKTPLEGTSMASGIVVGKVAVEAKQPNSAIRKAVRVQLKKNSK VVTAFVPRDGSLRLIDDNDRVLIAGMGRSGRSVGDLPGCRFKVIKVAGFSLLALWLGKKEKPRS A2D895 Ribosomal protein S24e, putative Trichomonas vaginalis 0.016069884 1 LEVO MSKVSVHIRKYIVNKLLDRKQFVIDMQHLGAKAPTRDEIKDEVASRLKANKDLVVIFGLETKFGGGHTTGFGFVYDSLDA LKKTEPKHRLIKAGLAEKGKVTRRMRKNARRQKVKVWGSGKRAEAHKIRRQQRKEELGSH A2F0H5 Uncharacterized protein Trichomonas vaginalis 0.012645859 1 LEVO MSAKGGARKKWTKATNKEKREWAVIITPEQAADMVKSVPKNKVISAGKLAERYKISLTCARKALEALTAEGKIVPVINGH DLKCYGPHPDHVVEKVEEVKEETKKPAGKKGGKKQ A2ER97 40S ribosomal protein S26 Trichomonas vaginalis 0.013889255999999999 1 LEVO MPVKRRNHGRSKMNRGHTRTVNCMNCGRQVPKDKAITRFAIKNMVDASSAKDVSDACIYQGYELPKTYQKQYYCVSCAVH RHVVRPRNVNVRRNRVPLFLKLRLEKLEQRNAQRLSKE A2DST7 40S ribosomal protein S27 Trichomonas vaginalis 0.009467907 1 LEVO MTTLDVDILHPSVEQELHTNKKKTLVPNPRSEFLSLRCPSCTGLTTAFSHSNVPVFCKNCQTPLATPTGGRILLADQVEI RPRVNA A2FBZ2 Uncharacterized protein Trichomonas vaginalis 0.007650717 1 LEVO MESTQEQVKLAVVKQVIGRTGSRGGVTQVRVEFLDDSNRSLVRNVKGAVREGDILSLLETEREARRLR A2DQN8 40S ribosomal protein S29, putative Trichomonas vaginalis 0.0068431 1 LEVO MPVDFVPKHPRDNAKGSVERSCRICGKRRGVIRQYRLNICRRCFRERAELLGFKKYD A2DYA8 40S ribosomal protein S30 Trichomonas vaginalis 0.006919078999999999 1 LEVO MGKVHGSLAQAGKVRSNTPKVAKMDKPKEVRGRARLRKIYNQRFLAVNPDAKRKTGPNSQSQ A2FHY5 Guanine nucleotide-binding protein beta subunit, putative Trichomonas vaginalis 0.037151832 1 LEVO MSAEQPVEQVEQVEVEETQSAHFAPRATFVGHNAAIESIEIDNEHNYLVSASRDKSALVWKLNRTQEQWATPFTRLIGHN HFVSDVSLSRDASHLLTSSWDSTLRLWDLSTRTTKKLFLGHKKDVLGVTFSPCNRRIISVGRDNQVKIWNILGENKAELQ CSSWVTSVACAPMADETSPLVIAVGCWDGKVYIWSIEKEAKLIKEFKAHDGRCTSVDFTPDGKWVITGGSDRKVVMWLTE NGAKTISFTAPSPVHAVAACPTQAWICAATYEGIAVWDIGAKQQIDLVQPNFKHEGKRNAGRTPDCTCLAWAADGSVLYS GYNDGSIRAWEVKSA A2ELV7 eL41 Trichomonas vaginalis 0.003354243 1 LEVO MRAKWRKKRTRRLKRKRRKVRARSK singleParticle particle 7.4 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) 2.0 1 3.35 FSC 0.143 CUT-OFF 57162 PROJECTION MATCHING ANGULAR RECONSTITUTION emd_6788.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 422.40002 422.40002 422.40002 90.0 90.0 90.0 X Y Z -0.13911201 0.26773617 0.00029812296 0.005232952 1.32 1.32 1.32 0.036 AUTHOR emd_6788_msk_1.map