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    <admin>
        <current_status>
            <date>2020-02-12</date>
            <code>REL</code>
            <processing_site>PDBj</processing_site>
        </current_status>
        <sites>
            <deposition>PDBj</deposition>
            <last_processing>PDBj</last_processing>
        </sites>
        <key_dates>
            <deposition>2017-05-26</deposition>
            <header_release>2017-06-14</header_release>
            <map_release>2017-06-14</map_release>
            <update>2020-02-12</update>
        </key_dates>
        <title>CryoEM structure of PCV2 VLPs</title>
        <authors_list>
            <author>Mo X</author>
            <author>Yuan AY</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Mo X</author>
                    <author order="2">Li X</author>
                    <author order="3">Yin B</author>
                    <author order="4">Deng J</author>
                    <author order="5">Tian K</author>
                    <author order="6">Yuan A</author>
                    <title>Structural roles of PCV2 capsid protein N-terminus in PCV2 particle assembly and identification of PCV2 type-specific neutralizing epitope.</title>
                    <journal_abbreviation>PLoS Pathog.</journal_abbreviation>
                    <country>US</country>
                    <volume>15</volume>
                    <first_page>e1007562</first_page>
                    <last_page>e1007562</last_page>
                    <year>2019</year>
                    <external_references type="PUBMED">30822338</external_references>
                    <external_references type="DOI">doi:10.1371/journal.ppat.1007562</external_references>
                    <external_references type="ISSN">1553-7374</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-6746</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
                <details>Drosophila full length cryoEM structure of C3PO complex</details>
            </emdb_reference>
        </emdb_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>5zbo</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
    </crossreferences>
    <sample>
        <name>Capsid protein</name>
        <supramolecule_list>
            <virus_supramolecule supramolecule_id="1">
                <name>Porcine circovirus 2</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <details>Porcine circovirus 2 capsid protein</details>
                <sci_species_name ncbi="85708">Porcine circovirus 2</sci_species_name>
                <host_system database="NCBI">
                    <recombinant_organism ncbi="1182032">Escherichia coli-Pichia pastoris shuttle vector pPpARG4</recombinant_organism>
                </host_system>
                <molecular_weight>
                    <experimental units="MDa">1.7</experimental>
                </molecular_weight>
                <virus_type>VIRUS-LIKE PARTICLE</virus_type>
                <virus_isolate>STRAIN</virus_isolate>
                <virus_enveloped>false</virus_enveloped>
                <virus_empty>true</virus_empty>
            </virus_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">1</concentration>
                    <buffer>
                        <ph>7</ph>
                        <component>
                            <concentration units="mM">500.0</concentration>
                            <formula>NaCl</formula>
                            <name>sodium chloride</name>
                        </component>
                        <component>
                            <concentration units="mM">20.0</concentration>
                            <formula>Tris</formula>
                            <name>Tris</name>
                        </component>
                        <details>20mM Tris(pH 7.0), 500mM NaCl</details>
                    </buffer>
                    <grid>
                        <model>Quantifoil R2/2</model>
                        <material>COPPER</material>
                        <mesh>400</mesh>
                        <support_film film_type_id="1">
                            <film_material>FORMVAR</film_material>
                            <film_topology>HOLEY</film_topology>
                        </support_film>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                            <atmosphere>AIR</atmosphere>
                            <pressure units="kPa">101.325</pressure>
                        </pretreatment>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">100</chamber_humidity>
                        <chamber_temperature units="K">298</chamber_temperature>
                        <instrument>FEI VITROBOT MARK IV</instrument>
                        <details>blot for 5 seconds before pluning. </details>
                    </vitrification>
                    <details>This sample was monodisperse</details>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN</microscope>
                    <illumination_mode>OTHER</illumination_mode>
                    <imaging_mode>DARK FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_cs units="mm">2.7</nominal_cs>
                    <nominal_defocus_min units="µm">1.0</nominal_defocus_min>
                    <calibrated_defocus_min units="µm">1.0</calibrated_defocus_min>
                    <nominal_defocus_max units="µm">3.0</nominal_defocus_max>
                    <calibrated_defocus_max units="µm">3.0</calibrated_defocus_max>
                    <nominal_magnification>47000.0</nominal_magnification>
                    <calibrated_magnification>47000.0</calibrated_magnification>
                    <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <temperature>
                        <temperature_min units="K">70.0</temperature_min>
                        <temperature_max units="K">70.0</temperature_max>
                    </temperature>
                    <alignment_procedure>
                        <basic/>
                    </alignment_procedure>
                    <details>Preliminary grid screening was performed manually.</details>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI FALCON II (4k x 4k)</film_or_detector_model>
                            <number_grids_imaged>8</number_grids_imaged>
                            <number_real_images>151</number_real_images>
                            <average_exposure_time units="s">1.0</average_exposure_time>
                            <average_electron_dose_per_image units="e/Å^2">25.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <particle_selection>
                    <number_selected>20000</number_selected>
                </particle_selection>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>1.4</version>
                        </software>
                    </software_list>
                </ctf_correction>
                <final_reconstruction>
                    <number_classes_used>20</number_classes_used>
                    <algorithm>BACK PROJECTION</algorithm>
                    <resolution units="Å" res_type="BY AUTHOR">4.12</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>1.4</version>
                        </software>
                    </software_list>
                    <number_images_used>9000</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>NOT APPLICABLE</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>NOT APPLICABLE</type>
                </final_angle_assignment>
                <final_three_d_classification>
                    <number_classes>32</number_classes>
                    <average_number_members_per_class>200</average_number_members_per_class>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>1.4</version>
                        </software>
                    </software_list>
                </final_three_d_classification>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="32001">
        <file>emd_6746.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>200</col>
            <row>200</row>
            <sec>200</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>200</x>
            <y>200</y>
            <z>200</z>
        </spacing>
        <cell>
            <a units="Å">338.0</a>
            <b units="Å">338.0</b>
            <c units="Å">338.0</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.08761065</minimum>
            <maximum>0.21074177</maximum>
            <average>0.0057879463</average>
            <std>0.023141513</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.69</x>
            <y units="Å">1.69</y>
            <z units="Å">1.69</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.0929</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-6746::::</label>
        <annotation_details>Cryo-EM structure of full length PCV2 VLPs</annotation_details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <refinement_protocol>AB INITIO MODEL</refinement_protocol>
                <refinement_space>RECIPROCAL</refinement_space>
                <overall_bvalue>200</overall_bvalue>
            </modelling>
        </modelling_list>
    </interpretation>
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