2026-09-16 REL PDBj INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update STRUCTURE_SUMMARY chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle pdbx_validate_chiral struct_conn _chem_comp.formula _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY chem_comp chem_comp_atom chem_comp_bond em_admin pdbx_entry_details pdbx_modification_feature pdbx_nonpoly_atom_coordination pdbx_struct_conn_angle pdbx_validate_chiral struct_conn _chem_comp.formula _chem_comp_atom.pdbx_stereo_config _em_admin.last_update STRUCTURE_SUMMARY em_admin pdbx_modification_feature _em_admin.last_update _pdbx_modification_feature.ref_pcm_id EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update PDBj PDBj 2017-05-23 2017-09-27 2017-09-27 2026-09-16 The Strategic Priority Research Program XDB08020302 China The Key Research Program of Frontier Sciences of CAS QYZDB-SSW-SMC005 China National 973 project grant 2011CBA00900 China National Natural Science Foundation of China 31570724 and 31270793 China Su XD Ma J Photosystem II, PSII-LHCII, C2S2M2, Supercomplex, MEMBRANE PROTEIN Su X Ma J Wei X Cao P Zhu D Chang W Liu Z Zhang X Li M Science US 357 815 820 2017 28839073 doi:10.1126/science.aan0327 1095-9203 0038 SCIEAS 5xnl FULLOVERLAP EMDB EMD-6741 associated EM volume

Structure of stacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum

C2S2M2-type PSII-LHCII supercomplex from Pisum sativum C2S2M2-type PSII-LHCII supercomplex from Pisum sativum 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 Pisum sativum Chlorophyll a-b binding protein 8, chloroplastic Pisum sativum 0.024952113 10 LEVO RKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCV FPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGS FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK P27490 Chlorophyll a-b binding protein, chloroplastic Pisum sativum 0.02654524 2 LEVO RKSANPLRDVVAMGTSKFTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRW AMLGALGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRINGLPDVG EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFV PGA Q04918 Light harvesting chlorophyll a/b-binding protein Lhcb6, CP24 Pisum sativum 0.022858957 2 LEVO AASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWF EAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFVNSTGEQGYPGGKFFDPLSLAGT IENGVYIPDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL Photosystem II protein D1 Pisum sativum 0.038147429999999996 2 LEVO MTAILERRDSENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISG AIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLI YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADI INRANLGMEVMHERNAHNFPLDLA P06585 1.10.3.9 Photosystem II CP47 reaction center protein Pisum sativum 0.056117839999999995 2 LEVO MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWNI TGGTITNPGIWSYEGVAAAHIVFSGLCFLAAIWHWLYWDLEIFCDERTGKPSLDLPKIFGIHLFLAGVACFGFGAFHVTG LFGPGIWVSDPYGLTGRVQSVNPAWGVDGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSS SIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGHVENQSLSEAWSKIPEKLAFYDYIGNNPA KGGLFRAGSMDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRGDVPFRRAESKYSVEQVGVIVE FYGGELNGVTYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDLFA GIDPDLDAQVEFGAFQKLGDPTTRRGL Q9XQR6 Photosystem II CP43 reaction center protein Pisum sativum 0.052035629 2 LEVO MKTLYSLRRFYHVETLFNGTLALTGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKP MYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTI LGIHLILLGIGSFLLVFKAFYFGGIYDTWAPGGGDVRKITNFTLSPSILFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWL GSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALAVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVR DQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP LGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN P06004 Photosystem II D2 protein Pisum sativum 0.039557199 2 LEVO MTIALGKFTKDQNDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVS TPANSLAHSLLLLWGPEAQGDLTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLI YPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNI LLNEGIRAWMATQDQPHENLIFPEEVLPRGNAL P06006 1.10.3.9 Cytochrome b559 subunit alpha Pisum sativum 0.009421555 2 LEVO MSGSTGERSFADIITSIRYWIIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTETRQGIPLITGRFDSLEQLDEFS RSF P13554 Cytochrome b559 subunit beta, PsbF Pisum sativum 0.004488323999999999 2 LEVO MTIDRTYPIFTVRWLAVHGLAVPTVFFLGSISAMQFIQR Photosystem II reaction center protein H Pisum sativum 0.007863094 2 LEVO MATQTVENSSRSGPRRTAVGDLLKPLNSEYGKVAPGWGTTPLMGIAMALFAVFLSIILEIYNSSLLLDQISMN Q9XQR3 Photosystem II reaction center protein I, PsbI Pisum sativum 0.004184917999999999 2 LEVO MLTLKLFVYTIVIFFVSLFIFGFLSNDPGRNPGREE Photosystem II reaction center protein J Pisum sativum 0.004116847 2 LEVO MANTTGRIPLWIIGTVAGIVVIGLIGLFFYGSYSGLGSSL P13555 Photosystem II reaction center protein K Pisum sativum 0.00691229 2 LEVO MLNIFSLVCICINSALYSSSFFLGKLPEAYAFLNPIVDFMPVIPLLFFLLAFVWQAAVSFR D5MAJ8 Photosystem II reaction center protein L Pisum sativum 0.0044981000000000005 2 LEVO MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN P60147 Photosystem II reaction center protein M Pisum sativum 0.003756513 2 LEVO MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD P69529 Oxygen-evolving enhancer protein 1, chloroplastic Pisum sativum 0.026554645999999998 2 LEVO EGAPKRLTFDEIQSKTYLEVKGTGTANQCPTIDGGVDSFSFKPGKYNAKKLCLEPTSFTVKSEGVTKNTPLAFQNTKLMT RLTYTLDEIEGPFEVSADGSVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPDSFSGEFLVPSYRGSSFLDPK GRGASTGYDNAVALPAGGRGDEEELGKENNKSAASSKGKITLSVTQTKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQG VWYAQLES P14226 Oxygen-evolving enhancer protein 2, chloroplastic Pisum sativum 0.020287493999999996 2 LEVO AYGEAANVFGKAKTNTDYLPYNGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEF LSKVDYLLGKQAFFGQTDSEGGFDTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVKDGKLYICK AQAGDKRWFKGARKFVEDTASSFSVA P16059 Oxygen-evolving enhancer protein 3 Pisum sativum 0.016398898000000002 2 LEVO EAIPIKVGGPPPLSGGLPGTLNSDEARDLKLPLKERFFIQPLAPTEAAARTKESAKEIVAAKKFIDQKAWPFLQNDLRLR AGYLRYDLKTIISSKPKDQKQSLKELTDKLFQDISNLDHAAKIKSPSEAEKYYAIAVSTLNDVLSKIA Q7Y1T5 Light harvesting chlorophyll a/b-binding protein Lhcb4, CP29 Pisum sativum 0.027138687999999998 2 LEVO KPSRSAPTTDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFEDVKSTPF QPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSTYLGQPLPFSITTLIWIEVLVIGYIEF QRNAELDSEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTII DTFSSS Light harvesting chlorophyll a/b-binding protein Lhcb5, CP26 Pisum sativum 0.026541544999999996 2 LEVO ALFSKKKAAPPKKAVVSPVDDELAKWYGPDRRIFLPEGLLDRSEIPAYLTGEVPGDYGYDPFGLSKKPDDFAKYQAYELI HGRWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLIFAVIAEVVLVGGAEYYRIINGLNL EDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFANNLLTVLAGSAER APTL Photosystem II reaction center protein T Pisum sativum 0.004036858999999999 2 LEVO MEALVYTFLLVSTLGIIFFAIFFREPPKVPTKNTK Q8HS25 Photosystem II reaction center protein W Pisum sativum 0.005914628999999999 2 LEVO LVDDRMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFIYASGLDEDEESGLSL Photosystem II reaction center protein X Pisum sativum 0.008692072 2 LEVO SIGRASSKSNGRFQVKASLKEKVVTGLTAAALTAQMVIPDVAEAATVSPSLKNFLLSIVSGGVVVTAILGAVIGVSNFDP VKRGSQ Q8VYY1 Photosystem II reaction center protein Z Pisum sativum 0.006555742 2 LEVO MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLIS Q32902 CHLOROPHYLL B 0.000907472 98 CHL CHLOROPHYLL A 0.000893489 216 CLA (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL 0.000568871 32 LUT (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL 0.00060087 16 XAT (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL 0.00060087 16 NEX 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 0.00072297 36 LHG BETA-CAROTENE 0.000536873 24 BCR CA-MN4-O5 CLUSTER 0.00033982699999999996 2 OEX FE (II) ION 5.5845e-05 2 FE2 CHLORIDE ION 3.5453e-05 4 CL PHEOPHYTIN A 0.0008712 4 PHO 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL 0.0007951159999999999 8 SQD 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE 0.0007871579999999999 14 LMG 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE 0.000749201 4 PL9 DIGALACTOSYL DIACYL GLYCEROL (DGDG) 0.0009492989999999999 10 DGD BICARBONATE ION 6.1017e-05 2 BCT PROTOPORPHYRIN IX CONTAINING FE 0.000616487 2 HEM water 1.8015e-05 1076 HOH singleParticle particle 3.0 5.7 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) 60.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION C2 2.7 FSC 0.143 CUT-OFF 136521 RANDOM ASSIGNMENT PROJECTION MATCHING REAL