<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-6723" version="3.0.0.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_0_1/emdb.xsd">
    <admin>
        <current_status>
            <date>2018-10-03</date>
            <code>REL</code>
            <processing_site>PDBj</processing_site>
        </current_status>
        <sites>
            <deposition>PDBj</deposition>
            <last_processing>PDBj</last_processing>
        </sites>
        <key_dates>
            <deposition>2017-05-03</deposition>
            <header_release>2018-01-31</header_release>
            <map_release>2018-01-31</map_release>
            <update>2018-10-03</update>
        </key_dates>
        <title>Drosophila full length cryo-EM structure of C3PO complex with a point mutation on TRAX subunit at E126 position.</title>
        <authors_list>
            <author>Mo X</author>
            <author>Yuan AY</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Mo X</author>
                    <author order="2">Yang X</author>
                    <author order="3">Yuan YA</author>
                    <title>Structural insights into Drosophila-C3PO complex assembly and 'Dynamic Side Port' model in substrate entry and release</title>
                    <journal_abbreviation>Nucleic Acids Res.</journal_abbreviation>
                    <country>UK</country>
                    <volume>46</volume>
                    <first_page>8590</first_page>
                    <last_page>8604</last_page>
                    <year>2018</year>
                    <external_references type="PUBMED">29860349</external_references>
                    <external_references type="DOI">doi:10.1093/nar/gky465</external_references>
                    <external_references type="ISSN">1362-4962</external_references>
                    <external_references type="CSD">0389</external_references>
                    <external_references type="ASTM">NARHAD</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-6723</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>C3PO</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>C3PO</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <details>In Drosophila, component 3 promoter of RISC (C3PO)is a complex, consisting of 4 Trax/Translin heterodimers.</details>
                <natural_source database="NCBI">
                    <organism ncbi="7215">Drosophila</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="1182032">E.COLi</recombinant_organism>
                    <recombinant_strain>DH5a</recombinant_strain>
                    <recombinant_plasmid>pET-Duet</recombinant_plasmid>
                </recombinant_expression>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="1182032">E.COLI</recombinant_organism>
                    <recombinant_strain>DH5a</recombinant_strain>
                    <recombinant_plasmid>pET-Duet</recombinant_plasmid>
                </recombinant_expression>
            </complex_supramolecule>
            <complex_supramolecule supramolecule_id="2">
                <name>TRAX_E126Q</name>
                <parent>1</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <details>Translin-associated factor X, with a point mutation at E126 position</details>
            </complex_supramolecule>
            <complex_supramolecule supramolecule_id="3">
                <name>Translin</name>
                <parent>1</parent>
                <details>A key component in C3PO complex</details>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">1</concentration>
                    <buffer>
                        <ph>7.4</ph>
                        <component>
                            <concentration units="mM">0.5</concentration>
                            <formula>NaCl</formula>
                            <name>sodium chloride</name>
                        </component>
                        <component>
                            <concentration units="mM">20.0</concentration>
                            <formula>Tris</formula>
                            <name>Tris</name>
                        </component>
                        <component>
                            <concentration units="mM">2.0</concentration>
                            <formula>DTT</formula>
                            <name>DTT</name>
                        </component>
                        <component>
                            <concentration units="mM">1.0</concentration>
                            <formula>EDTA</formula>
                            <name>EDTA</name>
                        </component>
                        <details>20mM Tris (pH 7.4), 500mM NaCl, 1mM DTT and 2mM EDTA</details>
                    </buffer>
                    <grid>
                        <model>Quantifoil R2/2</model>
                        <material>COPPER</material>
                        <mesh>400</mesh>
                        <support_film film_type_id="1">
                            <film_material>FORMVAR</film_material>
                            <film_topology>HOLEY</film_topology>
                        </support_film>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                            <atmosphere>AIR</atmosphere>
                            <pressure units="kPa">101.325</pressure>
                        </pretreatment>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">100</chamber_humidity>
                        <chamber_temperature units="K">298</chamber_temperature>
                        <instrument>FEI VITROBOT MARK IV</instrument>
                        <details>blot for 5 seconds before pluning. </details>
                    </vitrification>
                    <details>This sample was monodisperse.</details>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>JEOL 2200FS</microscope>
                    <illumination_mode>OTHER</illumination_mode>
                    <imaging_mode>DARK FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <nominal_cs units="mm">2.2</nominal_cs>
                    <nominal_defocus_min units="&#181;m">1.2</nominal_defocus_min>
                    <calibrated_defocus_min units="&#181;m">1.2</calibrated_defocus_min>
                    <nominal_defocus_max units="&#181;m">5.0</nominal_defocus_max>
                    <calibrated_defocus_max units="&#181;m">5.0</calibrated_defocus_max>
                    <nominal_magnification>67000.</nominal_magnification>
                    <calibrated_magnification>67000.</calibrated_magnification>
                    <specimen_holder_model>GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER</specimen_holder_model>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <temperature>
                        <temperature_min units="K">70.0</temperature_min>
                        <temperature_max units="K">70.0</temperature_max>
                    </temperature>
                    <alignment_procedure>
                        <basic />
                    </alignment_procedure>
                    <details>Preliminary grid screening was performed manually.</details>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN ULTRASCAN 4000 (4k x 4k)</film_or_detector_model>
                            <number_grids_imaged>20</number_grids_imaged>
                            <number_real_images>200</number_real_images>
                            <average_exposure_time units="s">1.0</average_exposure_time>
                            <average_electron_dose_per_image units="e/&#8491;^2">20.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <particle_selection>
                    <number_selected>16000</number_selected>
                </particle_selection>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>EMAN2</name>
                            <version>2.1</version>
                        </software>
                    </software_list>
                </ctf_correction>
                <final_reconstruction>
                    <number_classes_used>165</number_classes_used>
                    <applied_symmetry>
                        <point_group>C1</point_group>
                    </applied_symmetry>
                    <algorithm>BACK PROJECTION</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">19.7</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>EMAN2</name>
                            <version>2.1</version>
                        </software>
                    </software_list>
                    <number_images_used>5600</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>NOT APPLICABLE</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>NOT APPLICABLE</type>
                </final_angle_assignment>
                <final_three_d_classification>
                    <number_classes>32</number_classes>
                    <average_number_members_per_class>80.</average_number_members_per_class>
                    <software_list>
                        <software>
                            <name>EMAN2</name>
                            <version>2.1</version>
                        </software>
                    </software_list>
                </final_three_d_classification>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="10977">
        <file>emd_6723.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>140</col>
            <row>140</row>
            <sec>140</sec>
        </dimensions>
        <origin>
            <col>-70</col>
            <row>-70</row>
            <sec>-70</sec>
        </origin>
        <spacing>
            <x>140</x>
            <y>140</y>
            <z>140</z>
        </spacing>
        <cell>
            <a units="&#8491;">236.6</a>
            <b units="&#8491;">236.6</b>
            <c units="&#8491;">236.6</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-18.366202999999999</minimum>
            <maximum>28.404540000000001</maximum>
            <average>0.3343558</average>
            <std>2.5344498</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">1.69</x>
            <y units="&#8491;">1.69</y>
            <z units="&#8491;">1.69</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>8.9</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-6723::::</label>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <refinement_protocol>AB INITIO MODEL</refinement_protocol>
                <refinement_space>RECIPROCAL</refinement_space>
                <overall_bvalue>300.</overall_bvalue>
            </modelling>
        </modelling_list>
    </interpretation>
</emd>