In situ structure of the PSI-LHCI-LHCII supercomplex from Oryza sativa

2026-08-12 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY PDBj PDBj 2025-11-04 2026-08-12 2026-08-12 2026-08-12 National Natural Science Foundation of China (NSFC) China In situ structure of the PSI-LHCI-LHCII supercomplex from Oryza sativa Li J Elias E Zhang K Croce R Zhu J Photosystem I, PSI-LHCI-LHCII, in situ, Oryza sativa, PHOTOSYNTHESIS Li J Elias E Zhang K Croce R Zhu J In situ structures of plant photosystem supercomplexes. Nature UK 2026 42527593 doi:10.1038/s41586-026-10847-3 1476-4687 0006 NATUAS 9xj9 FULLOVERLAP EMDB EMD-66932 associated EM volume

In situ structure of the PSI-LHCI-LHCII supercomplex from Oryza sativa In situ structure of the PSI-LHCI-LHCII supercomplex from Oryza sativa 0 8 9 Oryza sativa subsp. japonica Chlorophyll a-b binding protein, chloroplastic Oryza sativa Japonica Group 0.022068028999999996 1 LEVO SAEWMPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPGG QATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVG FCVQQSAYPGTGPLENLASHLSDPWHNNIGDIIIPRTIYP Q9ZSU0 Chlorophyll a-b binding protein, chloroplastic Oryza sativa Japonica Group 0.022765831999999996 1 LEVO AAPDRPIWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYT AGEQQYFTDTTTLFIIELILIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRT KEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAF Q6ZL95 Chlorophyll a-b binding protein, chloroplastic Oryza sativa Japonica Group 0.02433585 1 LEVO RQLWFASKQSLSYLDGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEVFNGRTAMMGVVGMVAPELLGKLGLVPAETAI PWFQTGVIPPAGTYTYWADPYTLFVFELALVGFAEHRRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGFG TKSEAEMKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSLKFH Q6H748 Chlorophyll A-B binding protein Oryza sativa Japonica Group 0.022188219 1 LEVO KGEWLPGLPSPTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWYDAGKA TYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSYSLPPHECGYPGSVFNPLNFEPTLEAKEKELANGRLAM LAFLGFLVQHNVTQKGPFDNLLQHLSDPWHNTIIQTLS B7EWI6 Photosystem I P700 chlorophyll a apoprotein A1 Oryza sativa Japonica Group 0.082310055 1 LEVO EVKIVVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTGDLEEISRKVFSAHFGQLSIIFLWLSGM YFHGARFSNYEAWLSDPTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALIFAS LMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINQFLDAGVDPKEIPLPHEFILNRDLLA QLYPSFAEGATPFFTLNWSKYAEFLSFRGGLDPITGGLWLSDIAHHHLAIAILFLIAGHMYRTNWGIGHGLKDILEAHKG PFTGQGHKGLYEILTTSWHAQLSLNLAMLGSTTIVVAHHMYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIVGAAAHAAI FMVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIFAQWVQNLH AGAPSVTAPGATTSTSLTWGGGELVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLG FRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGTISDQGVVTHITGGNFAQSSITINGWLRDF LWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIIQGRAVGVT HYLLGGIATTWAFFLARIIAVG P0C355 1.97.1.12 Photosystem I P700 chlorophyll a apoprotein A2 Oryza sativa Japonica Group 0.0823785 1 LEVO LRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFESWIQDPL HVRPIAHAIWDPHFGQPAVEAFTRGGAAGPVNIAYSGVYQWWYTIGLRTNEDLYTGALFLLFLSTLSLIGGWLHLQPKWK PSLSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLDVLPYPQGLGPLLTGQWNLYAQNPDSSNH LFGTTQGAGTAILTLLGGFHPQTQSLWLTDIAHHHLAIAFIFLIAGHMYRTNFGIGHSIKDLLEAHTPPGGRLGRGHKGL YDTINNSIHFQLGLALASLGVITSLVAQHMYSLPSYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNPEQ NEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTTYGFDILLSSTS GPAFNAGRTLWLPGWLNAVNENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGP GRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNS LSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYA AFLIASTSGKFG P0C356 1.97.1.12 Photosystem I iron-sulfur center Oryza sativa Japonica Group 0.008778148999999999 1 LEVO SHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY P0C359 1.97.1.12 Photosystem I reaction center subunit II, chloroplastic Oryza sativa Japonica Group 0.015983311 1 LEVO GFVPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSK YKINYQFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNVFDI Q84PB4 Photosystem I reaction center subunit IV Oryza sativa Japonica Group 0.0074664269999999994 1 LEVO PPIGPKRGTKVKILRRESYWYNGTGSVVTVDQDPNTRYPVVVRFAKVNYAGVSTNNYALDEIQEVK Q6Z3V7 Photosystem I reaction center subunit III Oryza sativa Japonica Group 0.017514418 1 LEVO DIAGLTPCKESKAFAKREKQSIKKLQSSLKKYAPDSAPALAINATIEKTKRRFENYGKFGLLCGADGLPHLIVSGDQRHW GEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMREIIIDVELAVKLLPRGFIWPVAAYRELITGNLVVDDADIGY Q8S7H8 Photosystem I reaction center subunit V, chloroplastic Oryza sativa Japonica Group 0.010711041999999999 1 LEVO LSPSLVISLSTGVSLFLGRFVFFNFQRENVAKQVPEQNGKTHFDAGDERAKEFAGLLRSNDPVGFNLVDVLAWGSLGHIV AYYILATCSNGYNPNFF Q652C4 Photosystem I reaction center subunit VI, chloroplastic Oryza sativa Japonica Group 0.010002325999999999 1 LEVO YGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDLLPIKK GPQLPPTPGPRGK Q0DG05 Photosystem I reaction center subunit VIII Oryza sativa Japonica Group 0.0032930129999999996 1 LEVO NLPSIFVPLVGLVFPAIAMASLFLYVQKNK P0C371 Photosystem I reaction center subunit IX Oryza sativa Japonica Group 0.004981871 1 LEVO MRDIKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALSFPFFSF P0C373 Photosystem I reaction center subunit psaK, chloroplastic Oryza sativa Japonica Group 0.008884315 1 LEVO YIGSATNVIMVTTTTLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGAVGHIMGVGVVLGLKNI GVLDQIIG Q84PB5 Photosystem I reaction center subunit XI, chloroplastic Oryza sativa Japonica Group 0.017252824 1 LEVO PTYQVVQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFALTGPLRNTPVHGQAGA LGAAGLVAILSVCLTMYGVASFGEGEPSTAPTLTLTGRKKEADKLQTADGWAKFTGGFFFGGISGVLWAYFLLYVLDLPY FFK Q2QSR5 Photosystem I reaction center subunit N, chloroplastic Oryza sativa Japonica Group 0.009746996999999999 1 LEVO VFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKEKYKCGSNV FWKW B8BNI3 H0622F05.3 protein Oryza sativa Japonica Group 0.010276701999999999 1 LEVO TFPQDWLRRDLNVIGFGLIGWIAPSSVPAINGNSLTGLFFSSIGQELSHFPSPPALDSPFWLWLVTWHLGLFLALTFGQI GFKGRTEGYFDK Q01L93 Chlorophyll a-b binding protein 1, chloroplastic Oryza sativa Japonica Group 0.023368407999999997 2 LEVO SPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAF AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG P12330 Chlorophyll a-b binding protein, chloroplastic Oryza sativa Japonica Group 0.02404515 1 LEVO APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGV KFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDP DTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK Q10HD0 CHLOROPHYLL B 0.000907472 30 CHL CHLOROPHYLL A 0.000893489 177 CLA (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL 0.000568871 5 LUT (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL 0.00060087 4 XAT BETA-CAROTENE 0.000536873 30 BCR 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 0.00072297 24 LHG (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYL PALMITATE 0.0006889719999999999 6 MGE PHYLLOQUINONE 0.000450696 2 PQN IRON/SULFUR CLUSTER 0.00035163999999999996 3 SF4 CHLOROPHYLL A ISOMER 0.000893489 1 CL0 DIGALACTOSYL DIACYL GLYCEROL (DGDG) 0.0009492989999999999 4 DGD singleParticle particle 7.3 ETHANE TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.4000000000000001 2.2 GATAN K3 (6k x 4k) 1.375 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 5ZJI 2.96 FSC 0.143 CUT-OFF cryoSPARC 124514 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_66932.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 419.84 419.84 419.84 90.0 90.0 90.0 X Y Z -0.19135 0.62199324 0.00019385865 0.012116994 0.82 0.82 0.82 0.018 AUTHOR ::::EMDATABANK.org::::EMD-66932:::: emd_66932_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 419.84 419.84 419.84 90.0 90.0 90.0 X Y Z -0.6712581 0.8588617 0.0004223735 0.017870633 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-66932:::: emd_66932_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 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