2026-10-14 REL PDBc INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY PDBj PDBc 2025-11-02 2026-10-14 2026-10-14 2026-10-14 National Natural Science Foundation of China (NSFC) 82341085 China Other government EKPG21-06 Other government SRPG22-002 Other government 2023B1212060050 Other government 2023B1212120009 Other government GIBHBRP24-02 SARS-CoV-2 Omicron JD.1.1 spike trimer (S-6P) in complex with 3 R102-9 Fabs and 3 C092 Fabs (3 RBD up) Liu B Niu C Li Z Yuan H Xiong X Spike protein, Antibody Fab fragment, Complex, VIRAL PROTEIN/IMMUNE SYSTEM, VIRAL PROTEIN-IMMUNE SYSTEM complex Yan Q Huang X Liu B Yao Y Zheng H Song Y Wu F He Z Chen F Niu C Li Z Yuan H Chen L Zang N Xiao J Wang T Chen C Li S Bai H Li J Wu M Yao J Zhao J Yang Y Zhu A Xiong X Zhao J Artificial intelligence-driven discovery of ultrapotent and broadly neutralizing antibodies against SARS-CoV-2 from a long-lived public antibody lineage To be published 0353 9xic FULLOVERLAP EMDB EMD-66903 associated EM volume
SARS-CoV-2 Omicron JD.1.1 spike trimer (S-6P) in complex with 3 R102-9 Fabs and 3 C092 Fabs (3 RBD up)
 SARS-CoV-2 Omicron JD.1.1 spike trimer (S-6P) in complex with 3 R102-9 Fabs and 3 C092 Fabs (3 RBD up) SARS-CoV-2 Omicron JD.1.1 spike trimer (S-6P) in complex with 3 R102-9 Fabs and 3 C092 Fabs (3 RBD up) 0 1 2 3 4 5 Severe acute respiratory syndrome coronavirus 2 Spike glycoprotein Severe acute respiratory syndrome coronavirus 2 0.138187203 3 Homo sapiens LEVO QCVNLITRTQSYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPALPFNDGVYFASTE KSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDVYQKNNKSWMESEFRVYSSANNCTFEYVSQPFLM DLEGKEGNFKNLREFVFKNIDGYFKIYSKHTPINLERDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPVDSSSG WTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCP FHEVFNATTFASVYAWNRKRISNCVADYSVIYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGN IADYNYKLPDDFTGCVIAWNSNKLDSKPSGNYNYLYRFLRKSKLKPFERDISTEIYQVGNKPCNGVAGPNCYSPLQSYGF RPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVR DPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEYVN NSYECDIPIGAGICASYQTQTKSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVD CTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKYFGGFNFSQILPDPSKPSKRSP IEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIP FPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNHNAQALNTLVKQLSSKFGAISSVL NDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAP HGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTV YDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKGSGREN LYFQGGGGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGHHHHHH P0DTC2 Heavy chain of C092 Fab Homo sapiens 0.024114055 3 Homo sapiens LEVO QVQLVQSGAEVKKPGSSVKVSCKASGGSFTNHFISWVRQAPGQGLEWMGRIIPILGTANYAQNFQGRVMMTADKSTSTAY MELSSLRSEDTAVYYCARDSGYSGYGSTYYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD Light chain of C092 Fab Homo sapiens 0.022886127 3 Homo sapiens LEVO QSVLTQPPSVSGAPGQRVTISCTGSNSNIGAGYDVHWYQQLPGAAPKLLIYGNNNRPSGVPDRFSGSKSDTSASLAITGL QVEDEADYYCQSYDSSLSDSVFGSGTKVTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPV KAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS Heavy chain of R102-9 Fab Homo sapiens 0.023422412 3 Homo sapiens LEVO EVQLVESGGGLVQPGGSLRLSCAASGIIVSRNYMSWVRQAPGKRPEWVSLIYPGGSTFYADSVKGRFTISRDNSKNMLFL QMNSLRAEDTAVYYCARDLTIRGEASWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNS GALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD Light chain of R102-9 Fab Homo sapiens 0.023547113 3 Homo sapiens LEVO EIVMTQSPATLSVSPGERATLSCRASQSFNSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQS EDFAVYYCQQYGDWPLWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNS QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 18 NAG singleParticle particle 8.0 ETHANE 100 295 TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.6 2.0 TFS FALCON 4i (4k x 4k) 50.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 8HC4 2.76 FSC 0.143 CUT-OFF cryoSPARC 206030 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_66903.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 373.752 373.752 373.752 90.0 90.0 90.0 X Y Z -0.25696012 0.66700244 0.0011910702 0.014230383 1.0382 1.0382 1.0382 0.0234 AUTHOR emd_66903_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 373.752 373.752 373.752 90.0 90.0 90.0 X Y Z -0.29070505 0.7329538 0.00094534614 0.019917753 1.0382 1.0382 1.0382 AUTHOR emd_66903_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 373.752 373.752 373.752 90.0 90.0 90.0 X Y Z -0.29613346 0.68925095 0.0009407444 0.019926745 1.0382 1.0382 1.0382 AUTHOR