2026-09-16 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY PDBj PDBj 2025-10-27 2026-08-12 2026-08-12 2026-09-16 Other government Research Grant Council - General Research Fund Hong Kong Plasmodium vivax Perforin-like protein 2 pore on membrane by cryoET subtomogram averaging Zhang Y Zhong LJ Song Y Gilbert RJC Ni T Yu XL Plasmodium; Perforin-like protein; PvPLP2, TOXIN Zhang Y Zhong L Song Y Guo M Ren K Yang T Huang Y Sirotkin I Yi G Jiao F Zhang P Gilbert RJC Ni T Yu X Molecular mechanism of pore formation by Plasmodium Perforin-like Protein 2. Nat Commun UK 17 2026 42675073 doi:10.1038/s41467-026-76236-6 2041-1723 EMDB EMD-66759 associated EM volume Plasmodium vivax Perforin-like Protein2 Pore Plasmodium vivax Perforin-like Protein2 Pore 0 Plasmodium vivax subtomogramAveraging particle 7.5 EMS Lacey Carbon 300 GLOW DISCHARGE AIR ETHANE TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.0 3.0 81000.0 NITROGEN TFS FALCON 4i (4k x 4k) 4.0
The tilt-series were acquired using Thermofisher Krios equipped with a Falcon 4i camera and Selectris energy filter. A dose-symmetric scheme (group of 2) was used, with a tilt range of -45 to 45 at 3 degree increments (or -40 to 40 at 4 degree increments)and an exposure dose of 4 e-/A2 per image. The total dose was 124(or 84) e-/A2.
 1 C1 FOURIER SPACE 8.98 FSC 0.143 CUT-OFF RELION v4 91441 1235 334526 emClarity v1.6.2 emClarity v1.6.2 RELION v4 PHASE FLIPPING AND AMPLITUDE CORRECTION MAXIMUM LIKELIHOOD RELION v4 emd_66759.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 377.04 377.04 377.04 90.0 90.0 90.0 X Y Z -0.52476984 1.5445433 0.0000018337789 0.112440966 3.142 3.142 3.142 0.4 AUTHOR local resolution map emd_66759_msk_1.map emd_66759_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 377.04 377.04 377.04 90.0 90.0 90.0 X Y Z -0.22693935 0.75005454 0.0072624832 0.040635858 3.142 3.142 3.142 AUTHOR postprocess map emd_66759_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 377.04 377.04 377.04 90.0 90.0 90.0 X Y Z -0.38490102 0.8655575 0.000000000000428 0.06598444 3.142 3.142 3.142 AUTHOR half map2 from reconstruction emd_66759_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 377.04 377.04 377.04 90.0 90.0 90.0 X Y Z -0.37169582 0.8430938 -0.000000000002167 0.06533798 3.142 3.142 3.142 AUTHOR half map1 from reconstruction