2026-10-07 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY PDBj PDBj 2025-10-10 2026-10-07 2026-10-07 2026-10-07 National Research Foundation (NRF, Korea) RS-2024-00333346 Korea, Republic Of National Research Foundation (NRF, Korea) RS-2023-00266300 Korea, Republic Of Structure of the old Killifish Proteasome Kim J Song JJ Kim Y Proteasome, Nothobranchius furzeri, aging, skeletal muscle, HYDROLASE Kim J Hyeon DY Lee S Ryu BH Gwak N Choi Y Vu HM Huh S Kim S Myung K Dieterich C Valenzano DR Kim MS Hwang D Song JJ Kim Y Ribosome remodels in age-dependent manner To Be Published 0353 9x4e FULLOVERLAP EMDB EMD-66543 associated EM volume
Structure of the old Killifish Proteasome
 Structure of the old Killifish Proteasome Structure of the old Killifish Proteasome 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 Nothobranchius furzeri skeletal muscle Proteasome subunit alpha type Nothobranchius furzeri skeletal muscle 0.025900440999999996 2 LEVO MAERGYSFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKASNGVVLATEKKQKSILYDEQSVHKVEPITKHIGMVYSGMG PDYRVLVRRARKLAQQYYLVYQEPIPTGQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEDHPYLFQSDPSGAYFAWKA TAMGKNYVNGKTFLEKRYNNDLELEDAIHTAILTLKESFEGQMTEENIEVGICNEAGFKRLTPAEVKDYLAAIA A0A1A7ZN72 Proteasome subunit alpha type Nothobranchius furzeri skeletal muscle 0.029405709 2 LEVO MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGIT SDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYMGWDKHYGFQLYQSDPSGNYGGWK ATCIGNNSAAAVSMLKQDYKEGEMTLSSALALAIKVLNKTMDVSKLSAEKVEIATLTREDGKTKIKVLKQKEVEELIKKH EAEEAKAEKDKKEKEQKEKDK A0A1A8B0E3 Proteasome subunit alpha type Nothobranchius furzeri skeletal muscle 0.028143229999999998 2 LEVO MAARYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGKDIVVLGVEKKSVAKLQEERTVRKICALDEHVCMAFAGLTA DARIVINRARVECQSHRLTVEDPVTVEYITRYIATLKQRYTQSNGRRPFGISALIVGFDYDGTPRLYQTDPSGTYHAWKA NAIGRSAKTVREFLEKNYTDEAIAGDNEAIKLAIKALLEVVQSGGKNIELAVIRRNQPLKILESKEIETLVAEIEKEKEE EAEKKKQKKST A0A1A8V7S3 Proteasome subunit alpha type Nothobranchius furzeri skeletal muscle 0.02644591 2 LEVO MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPNSIEKIVEIDSHIGCAMSG LIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLYHMDPSG TFVQCDARAIGSASEGAQSSLQEVYHKSMTLKDAIKSSLTILKQVMEEKLNATNIELATVEPGKTFHMYSKEELEDVIKD I A0A1A8V3Y9 Proteasome subunit alpha type Nothobranchius furzeri skeletal muscle 0.029380419999999997 2 LEVO MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTAD ARLLCNFMRQECLDSRFVFDRPLPISRLVSLVGSKTQIPTQRYGRRPYGVGLLIAGFDDMGPHIFQTCPSANYFDCRAMS IGARSQSARTYLERLMDKFSDCNLNDLVQHGLRALRETLPAEQDLTTKNVSIGIVGKDMEFTIYDDDDVAPFLEGLEERP QRKVAQPAVEPGAGEAPDEPMEH A0A1A8UYX9 Proteasome subunit alpha type Nothobranchius furzeri skeletal muscle 0.028428020999999998 2 LEVO MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRIFNIDKHVGMAVAG LLADARSLADVAREEASSFRSNYGHNIPLKHLSDRVAMYAHAYTLYSAVRPFGCSFILGSYDKDDGSQLYMVDPSGISYG YWGCAIGKAKQAAKTEIEKLQMKDMTCRELVKEVAKIIYIVHDEVKDKAFELELSWVGEVTNGRHEFVPKDIREEAEKYA KDSLEEEDDSDEDNM A0A1A7ZU17 Proteasome subunit alpha type Nothobranchius furzeri skeletal muscle 0.027471342 2 LEVO MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVVVTQKKVPDKLLDASTVTHLFRITDTIGCVM SGMTADSRSQVQRARYEAANWQYKYGYEIPVDMLCKRIADVSQVYTQNAEMRPLGCCMIVIGVDEEFGPQVYKCDPAGYY CGFKATAAGVKQTEATSFLEKKVKKKLDWTFEQTVETAISCLSTVLSIDFKPSELEVGVVTTQNPWFRTLTETEIDTHLM SLSERD A0A1A8U241 Proteasome subunit beta Nothobranchius furzeri skeletal muscle 0.025022372999999997 2 LEVO MAATAAMMPNFGQQISSKNDLVPDWTSQEVSTGTTIMAVEYEGGVVIGADSRTTTGAYIANRVTDKLTPIHERIFCCRSG SAADTQAIAEVVSYQLGFHSIELDEPPLVETAANLFRASCYRYREELMAGILVAGWDRRKGGQVYCVPIGGMLVRQPVAV GGSGSSYIYGFMDSNYKPALSKEECLELTASALALAMERDGSSGGVIRLATISEAGVERRVILGNQLPKFSTH A0A1A8A9L4 Proteasome subunit beta Nothobranchius furzeri skeletal muscle 0.023050856999999998 2 LEVO MSIMSYNGGAVMAMRGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGR QIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKSFEPFICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEP EDLFETISQAMLNAVDRDAVSGMGVVVHVIEKDKITTRTLKARMD A0A1A8ANK7 Proteasome subunit beta Nothobranchius furzeri skeletal muscle 0.029726891 2 LEVO MATVAVSRPPLGGFSFDNCKRNAILQGEANKVGFNLPAARKTGTTICGVVFKDGVVLGADTRATEGMIVADKNCSKIHYI SPNIYCCGAGTAADTEMTTQIISSNLELHALSTGRLPRVATANRMLKQMLFRYQGYIGAALVLGGVDCNGPHLYSIYPHG STDKLPYVTMGSGSLAAMAVFEDRYKPNMEEGEAKQLVHDAIAAGIFNDLGSGSNIDLCVITKGSVDYIRPHDEANKKGV RTGDYKYRRGTTTVLTKAVNPLDLELVEESIQTMDTS A0A1A8TWU4 Proteasome subunit 5 Nothobranchius furzeri skeletal muscle 0.032160511999999995
Sequence refers to XP_054589013.1
2 LEVO MINPGRTAHAQRKLLVHHALTKMALASVLSSDCVDFSFDYRQPFAVGCGPGQSGVDLEAAPGDSLKFSVKNSLLTGDEDG VERKIEFLHGTTTLAFKFQHGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRN KERISVAAASKLLANMVYQYKGMGLSMGTMVCGWDKRGPGLYYVDSEGNRVCGDLFAVGSGSMYAYGVVDSGVRNELTVE EACELGRRAIYQATYRDAYSGGQVNLYHVHSEGWTRVSQEDVLMLHQRYKEQA Proteasome subunit beta Nothobranchius furzeri skeletal muscle 0.023931571999999998 2 LEVO MEYLIGIQGPDFVLVAADNVAASSIIQMKHDYDKMFKLSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA ANFTRKNLADYLRSRTPYHVNLLLAGYDEAEGPGLFYMDYLSSLAKAPFAAHGYGAFLTLSILDRYYRPDLSRDDAVDLL KKCVEELSKRFILNLPSFTVRLIDKDGIHDMEKLTLSGEMARPMKATFYPAA A0A1A7ZAT0 Proteasome subunit beta Nothobranchius furzeri skeletal muscle 0.028307087999999998 2 LEVO MESYGTKLSFWENGPKPGQFYSFPGSSTSCGPVRHTLNPMVTGTSVLGVKFKGGVVIAADMLGSYGSLARFRNISRLMKV NDNTILGASGDYADYQYLKQVIEQMVIDEELLGDGHSYSPKAIHSWLTRVMYNRRSKMNPLWNTVVIGGFYNGESFLGYV DKLGVAYEAPTVATGFGAYLAQPLMREVVENKAEITKQEARDLVERCLKVLYYRDARSYNRHEIAIVTEEGVEIIGPLSS ETNWDIAHLISGFD A0A1A8AVF5 Proteasome subunit beta Nothobranchius furzeri skeletal muscle 0.026073697 2 LEVO MLSAQTFGDPGKMKDYHYTGPVEHRFSPYAFNGGTVLAVAGDDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSG FHGDCLTLTKIIDARLKMYKHSNNKTMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDTYK AGGSASAMLQPLLDNQIGFKNMEGVQHVPLTKEKAVQLVKDVFISAAERDVYTGDALRICVITKKGIDEQTLPLRKD A0A1A8UKL0 singleParticle particle 7.5 100.0 KCl Potassium Chloride 15.0 MgCl2 Magnesium Chloride 20.0 Tris-HCl Tris-hydrochloride Quantifoil R2/2 COPPER 300 GRAPHENE OXIDE ETHANE TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 0.3 1.0 NITROGEN GIF Bioquantum 20
BioQuantum K3 Imaging filter
 EPU GATAN K3 BIOQUANTUM (6k x 4k) 9136 5.87 60.23 1 2953254 PHASE FLIPPING AND AMPLITUDE CORRECTION C1 3.26 FSC 0.143 CUT-OFF cryoSPARC 4.2.1 121745 MAXIMUM LIKELIHOOD cryoSPARC 4.2.1 MAXIMUM LIKELIHOOD cryoSPARC 4.2.1 emd_66543.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 331.2 331.2 331.2 90.0 90.0 90.0 X Y Z -0.20054919 0.36601642 0.0000091203365 0.012506663 0.828 0.828 0.828 0.045 AUTHOR Sharpened old proteasome map emd_66543_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 331.2 331.2 331.2 90.0 90.0 90.0 X Y Z -0.05744324 0.14478055 0.000009364581 0.0063804956 0.828 0.828 0.828 AUTHOR Unfiltered old proteasome map emd_66543_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 331.2 331.2 331.2 90.0 90.0 90.0 X Y Z -0.16689104 0.2178916 0.00014561624 0.02172831 0.828 0.828 0.828 AUTHOR emd_66543_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 331.2 331.2 331.2 90.0 90.0 90.0 X Y Z -0.16440372 0.23567669 0.00015346374 0.021734493 0.828 0.828 0.828 AUTHOR