REL RCSB RCSB RCSB 2016-05-10 2016-06-01 2016-06-01 2016-06-01 Ensemble cryo-EM uncovers inchworm-like translocation of a viral IRES through the ribosome Abeyrathne PD Koh CS Grant T Grigorieff N Korostelev AA cryo-EM, translocation, IRES, ribosome, eEF2 Abeyrathne PD Koh CS Grant T Grigorieff N Korostelev AA Ensemble cryo-EM uncovers inchworm-like translocation of a viral IRES through the ribosome. eLife 5 e14874 e14874 2016 27159452 doi:10.7554/eLife.14874 5jup FULLOVERLAP Saccharomyces cerevisiae 80S ribosome bound to TSV IRES and eEF2 translation initiation complex, Structure II, Map 2 Saccharomyces cerevisiae 80S ribosome bound to TSV IRES and eEF2 translation initiation complex, Structure II, Map 2 3 3.2 Ribosome false Saccharomyces cerevisiae Yeast 3.2 ribosome-eukaryote: ALL Internal Ribosome Entry Site Taura syndrome virus 0.08 OTHER SINGLE STRANDED true eukaryotic elongation factor 2 Saccharomyces cerevisiae Yeast 0.094 false singleParticle particle 0.3
Quantifoil Cu 200 mesh
 ETHANE 85 103 FEI VITROBOT MARK II FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.7 2.5 18000.0 30487.0 FEI TITAN KRIOS AUTOGRID HOLDER Objective lens astigmatism was corrected at 120,000 times magnification. 0.0
10 electrons/physical pixel/second
2015-11-11 GATAN K2 SUMMIT (4k x 4k) 5 2662 70
Images recorded as movies in super-resolution mode.
8.
FREALIGN
each particle
 OTHER 3.6 OTHER Unblur, CTFFIND4, FREALIGN
The highest resolution included in the refinement was 7 Angstrom.
1105737 emd_6649.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 419.84 419.84 419.84 90.0 90.0 90.0 X Y Z -0.06203505 0.16280738 -0.00350942 0.01101214 1.64 1.64 1.64 0.042 EMDB Saccharomyces cerevisiae 80S ribosome bound to eEF2-GDP-sordarin and TSV IRES, Structure II. For classification, 2D masking around the E site was used, including the 5' domain of PKI.
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 3J6Y FLEXIBLE FIT Chimera REAL