REL RCSB RCSB RCSB 2016-03-24 2016-04-27 2016-04-27 2016-05-11 Glutamate dehydrogenase in complex with GTP Borgnia MJ Banerjee S Merk A Matthies D Bartesaghi A Rao P Pierson J Earl LA Falconieri V Subramaniam S Milne JLS enzyme, glutamate metabolism, mitochondria Borgnia MJ Banerjee S Merk A Matthies D Bartesaghi A Rao P Pierson J Earl LA Falconieri V Subramaniam S Milne JL Using cryo-EM to map small ligands on dynamic metabolic enzymes: Studies with glutamate dehydrogenase. MOL.PHARMACOL. 89 645 651 2016 27036132 doi:10.1124/mol.116.103382 3jd0 FULLOVERLAP Binary complex of bovine glutamate dehydrogenase with GTP Binary complex of bovine glutamate dehydrogenase with GTP
The sample was largely monodisperse. Some chains of hexamers were observed.
one homohexamer of GDH binds 6 molecules of GTP 2 0.339 L-glutamate:NAD(P)+ oxidoreductase (deaminating) Bos taurus Cow Liver Mitochondria Mitochondrial matrix 0.056
Bovine glutamate dehydrogenase (catalog no. G2626; Sigma-Aldrich) was dialyzed overnight against buffer (100 mM potassium phosphate, pH 6.8) prior to fractionation by size-exclusion chromatography using a Superdex 200 10/30 column.
6 hexamer false P00366 GO:0000166 GO:0004352 GO:0004353 GO:0004353 GO:0005524 GO:0005525 GO:0005739 GO:0005739 GO:0005743 GO:0005759 GO:0006520 GO:0006538 GO:0006541 GO:0016491 GO:0016491 GO:0055114 GO:0055114 GO:0072350 IPR006095 IPR006096 IPR006097 IPR016040 [[(2R,3S,4R,5R)-5-(2-amino-6-oxo-3H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] phosphono hydrogen phosphate unidentified 0.001 6 monomer false singleParticle particle 2.0 6.8
100 mM potassium phosphate, 0.1% n-octyl glucopyranoside, 1 mM GTP
200 mesh Quantifoil R2/2 grids (Quantifoil Micro Tools),
 ETHANE 90 90 FEI VITROBOT MARK IV Blot for about 4 seconds before plunging. FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.0 2.5 78426.0 FEI TITAN KRIOS AUTOGRID HOLDER GIF Quantum 0.0 20.0
The total exposure time was 15.2 seconds. Intermediate frames were recorded every 0.4 seconds, resulting in a total of 38 frames per image.
2014-05-15 GATAN K2 SUMMIT (4k x 4k) 381 45
Every image is the average of 38 frames recorded by the direct electron detector.
The particles were selected using an automatic selection program.
Each micrograph
 3.47 OTHER CTFFIND3, EMAN2, Relion 39439 8 emd_6631.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 163.21024 163.21024 163.21024 90.0 90.0 90.0 X Y Z -0.01948075 0.04830972 0.00085844 0.00407588 0.63754 0.63754 0.63754 0.015 AUTHOR Reconstruction of the BINARY complex of bovine glutamate dehydrogenase with GTP
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 3MW9 A FLEXIBLE FIT Chimera, Rosetta, PHENIX, Coot REAL