2026-07-01 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY PDBj PDBj 2025-07-31 2026-07-01 2026-07-01 2026-07-01 Japan Society for the Promotion of Science (JSPS) JP24K22020 Japan Japan Science and Technology JPMJSP2138 Japan Cryo-EM structure of Enterovirus-D68 MO strain virus-like particle Senpuku K Hirose M Ito T Kato T Yshioka Y Enterovirus-D68, MO strain, viral structural proteins, VIRUS LIKE PARTICLE Senpuku K Kunishima Y Hirose M Karaki T Taniguchi K Kataoka-Nakamura C Hirai T Yasuda K Kuroda E Kato T Ito T Yoshioka Y Comparative immunogenic and structural analysis of virus-like particle and inactivated whole-virion vaccines against enterovirus D68. Mol Ther Nucleic Acids US 37 102957 102957 2026 42293247 doi:10.1016/j.omtn.2026.102957 2162-2531 9w4i FULLOVERLAP EMDB EMD-65634 associated EM volume
Cryo-EM structure of Enterovirus-D68 MO strain virus-like particle
 Virus-like particle of enterovirus D68 consisting of Viral protein 1, Viral protein 0, and Viral protein 3 Virus-like particle of enterovirus D68 consisting of Viral protein 1, Viral protein 0, and Viral protein 3 0 1 2 3 enterovirus D68 5.64 Capsid protein VP1 enterovirus D68 0.032920309 1 Cricetulus griseus LEVO IESIIKTATDTVKSEINAELGVVPSLNAVETGATSNTEPEEAIQTRTVINQHGVSETLVENFLSRAALVSKRSFEYKDHT SSTARADKNFFKWTINTRSFVQLRRKLELFTYLRFDAEITILTTVAVNGSGNNTYVGLPDLTLQAMFVPTGALTPEKQDS FHWQSGSNASVFFKISDPPARITIPFMCINSAYSVFYDGFAGFEKNGLYGINPADTIGNLCVRIVNEHQPVGFTVTVRVY MKPKHIKAWAPRPPRTLPYMSIANANYKGKERAPNALSAIIGNRDSVKTMPHNIVNT A0A097BW12 Capsid protein VP0 enterovirus D68 0.035017227 1 Cricetulus griseus LEVO MGAQVTRQQTGTHENANIATNGSHITYNQINFYKDSYAASASKQDFSQDPSKFTEPVVEGLKAGAPVLKSPSAEACGYSD RVLQLKLGNSAIVTQEAANYCCAYGEWPNYLPDHEAVAIDKPTQPETATDRFYTLKSVKWETGSTGWWWKLPDALNNIGM FGQNVQHHYLYRSGFLIHVQCNATKFHQGALLVVAIPEHQRGAHNTNTSPGFDDIMKGEEGGTFNHPYVLDDGTSLACAT IFPHQWINLRTNNSATIVLPWMNAAPMDFPLRHNQWTLAIIPVVPLGTRTTSSMVPITVSIAPMCCEFNGLRHAITQ A0A097BW12 3.4.22.29 Capsid protein VP3 enterovirus D68 0.027112814 1 Cricetulus griseus LEVO GVPTYLLPGSGQFLTTDDHSSAPALPCFNPTPEMHIPGQVRNMLEVVQVESMMEINNTESAVGMERLKVDISALTDVDQL LFNIPLDIQLDGPLRNTLVGNISRYYTHWSGSLEMTFMFCGSFMAAGKLILCYTPPGGSCPTTRETAMLGTHIVWDFGLQ SSVTLIIPWISGSHYRMFNNDAKSTNANVGYVTCFMQTNLIVPSESSDTCSLIGFIAAKDDFSLRLMRDSPDIGQLDHLH AAEAAYQ A0A097BW12 singleParticle particle 1.6 8.0 137.0 NaCl sodium chloride 2.68 KCl Potassium chloride 8.1 Na2HPO4 Disodium hydrogen phosphate 1.47 KH2PO4 Potassium dihydrogen phosphate Quantifoil R1.2/1.3 GOLD 300 GLOW DISCHARGE AIR ETHANE 100 277 FEI VITROBOT MARK IV TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 100.0 0.061 0.6 0.109 1.8 2.594 81000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN Microsope was modified wit a CEOS Cs corrector. GIF Bioquantum 20 GATAN K3 BIOQUANTUM (6k x 4k) 5760 4092 1 819 7.82 50.0 1 274941 cryoSPARC 4.4.1 PHASE FLIPPING AND AMPLITUDE CORRECTION 2 I FOURIER SPACE 2.57 FSC 0.143 CUT-OFF cryoSPARC 4.4.1 58404 MAXIMUM LIKELIHOOD cryoSPARC 4.4.1 MAXIMUM LIKELIHOOD cryoSPARC 4.4.1 5 cryoSPARC 4.4.1 emd_65634.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 444.0 444.0 444.0 90.0 90.0 90.0 X Y Z -9.974762 15.0362425 0.0044190157 0.8259005 1.11 1.11 1.11 2.17 AUTHOR AlphaFold in silico model AB INITIO MODEL REAL emd_65634_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 444.0 444.0 444.0 90.0 90.0 90.0 X Y Z -1.3599045 3.0419164 0.0038878073 0.22279583 1.11 1.11 1.11 AUTHOR emd_65634_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 444.0 444.0 444.0 90.0 90.0 90.0 X Y Z -1.3655658 3.0632787 0.0038370253 0.2223592 1.11 1.11 1.11 AUTHOR