<emd emdb_id="EMD-6535" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2015-11-23</deposition>
            <header_release>2016-02-10</header_release>
            <map_release>2016-02-10</map_release>
            <update>2016-04-27</update>
        </key_dates>
        <title>Structure of the eukaryotic replicative CMG helicase and pumpjack motion</title>
        <authors_list>
            <author>Yuan Z</author>
            <author>Bai L</author>
            <author>Sun J</author>
            <author>Georgescu RE</author>
            <author>Liu J</author>
            <author>O'Donnell ME</author>
            <author>Li H</author>
        </authors_list>
        <keywords>CMG helicase, Cryo-EM</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Yuan Z</author>
                    <author order="2">Bai L</author>
                    <author order="3">Sun J</author>
                    <author order="4">Georgescu RE</author>
                    <author order="5">Liu J</author>
                    <author order="6">O'Donnell ME</author>
                    <author order="7">Li H</author>
                    <title>Structure of the eukaryotic replicative CMG helicase and pumpjack motion.</title>
                    <journal>Nat.Struct.Mol.Biol.</journal>
                    <volume>23</volume>
                    <first_page>217</first_page>
                    <last_page>224</last_page>
                    <year>2016</year>
                    <external_references type="PUBMED">26854665</external_references>
                    <external_references type="DOI">doi:10.1038/nsmb.3170</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>3jc5</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
    </crossreferences>
    <sample>
        <name>Saccharomyces cerevisiae CMG complex</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>Saccharomyces cerevisiae CMG complex</name>
                <number_unique_components>1</number_unique_components>
                <molecular_weight>
                    <theoretical units="MDa">0.7</theoretical>
                </molecular_weight>
            </sample_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name synonym="CMG">CMG complex</name>
                <natural_source database="NCBI">
                    <organism ncbi="4932">Saccharomyces cerevisiae</organism>
                    <synonym_organism>Yeast</synonym_organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.7</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="4932">Saccharomyces cerevisiae</recombinant_organism>
                </recombinant_expression>
                <sequence />
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">0.6</concentration>
                    <buffer>
                        <details>20 mM Tris acetate, 40 mM potassium glutamate, 2 mM DTT, 0.1 mM EDTA</details>
                    </buffer>
                    <grid>
                        <details>400 mesh holey carbon C-flat grid, glow-discharged in air</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">90</chamber_humidity>
                        <instrument>FEI VITROBOT MARK IV</instrument>
                        <method>Blot for 3 seconds before plunging</method>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_defocus_min units="&#181;m">1.5</nominal_defocus_min>
                    <nominal_defocus_max units="&#181;m">3.5</nominal_defocus_max>
                    <nominal_magnification>29000.0</nominal_magnification>
                    <calibrated_magnification>49505.0</calibrated_magnification>
                    <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
                    <date>2015-08-01</date>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="CCD">GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <number_real_images>8000</number_real_images>
                            <average_electron_dose_per_image units="e/&#8491;^2">50</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <details>All steps, including automatic particle picking, 2D classification, 3D classification, and 3D refinement were performed in Relion 1.4.</details>
                <ctf_correction>
                    <details>CTFFIND4</details>
                </ctf_correction>
                <final_reconstruction>
                    <resolution res_type="BY AUTHOR" units="&#8491;">4.7</resolution>
                    <resolution_method>OTHER</resolution_method>
                    <software_list>
                        <software>
                            <name>Relion_1.4</name>
                        </software>
                    </software_list>
                    <number_images_used>178530</number_images_used>
                </final_reconstruction>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="65537">
        <file>emd_6535.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>256</col>
            <row>256</row>
            <sec>256</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>256</x>
            <y>256</y>
            <z>256</z>
        </spacing>
        <cell>
            <a units="&#8491;">258.56</a>
            <b units="&#8491;">258.56</b>
            <c units="&#8491;">258.56</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.02877966</minimum>
            <maximum>0.06427838</maximum>
            <average>0.00066107</average>
            <std>0.00432134</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">1.01</x>
            <y units="&#8491;">1.01</y>
            <z units="&#8491;">1.01</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.018</level>
                <source>EMDB</source>
            </contour>
        </contour_list>
        <annotation_details>Structure of CMG with "Flat" Mcm2-7 ring</annotation_details>
        <details>::::EMDATABANK.org::::EMD-6535::::</details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <initial_model>
                    <access_code>2Q9Q</access_code>
                </initial_model>
                <refinement_protocol>RIGID BODY FIT</refinement_protocol>
                <software_list>
                    <software>
                        <name>Chimera</name>
                    </software>
                </software_list>
                <refinement_space>REAL</refinement_space>
            </modelling>
        </modelling_list>
        <figure_list>
            <figure>
                <file>emd_6535.jpg</file>
            </figure>
        </figure_list>
    </interpretation>
</emd>