2026-08-12 REL PDBc INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY chem_comp chem_comp_atom em_admin pdbx_modification_feature pdbx_nonpoly_atom_coordination pdbx_validate_chiral _chem_comp.formula _chem_comp_atom.pdbx_stereo_config _em_admin.last_update EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update PDBj PDBc 2025-06-21 2026-02-18 2026-02-18 2026-08-12 National Science Foundation (NSF, China) China Cryo-EM structure of Euglenophyte photosystem I Zhao LS Qin BY Li K Liu LN Zhang YZ Euglenophyte, Photosystem I, evolution, PHOTOSYNTHESIS Zhao LS Qin BY Li K Zhang YZ Liu LN Cryo-EM structure of Euglenophyte photosystem I To Be Published 0353 9vjs FULLOVERLAP EMDB EMD-65121 associated EM volume
Cryo-EM structure of Euglenophyte photosystem I
 Cryo-EM structure of Euglenophyte photosystem I Cryo-EM structure of Euglenophyte photosystem I 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 Euglena gracilis 0.76 Photosystem I P700 chlorophyll a apoprotein A1 Euglena gracilis 0.084059406 1 LEVO MTITPPEQQVKRVRVAFVSNPVETSFEKWSRPGHFSRLLSKGPNTTTWIWNLHADAHDFDNHTTDLEDISRKVFSAHFGQ LAIIEIWLSGMFFHGARFSNYEAWLLDPIHVKPSAQIVWPIVGQEILNGDVGGNFQGIQITSGLFQLWRSCGITSEFQLY ITALTGLIFSAVLFFAGWFHYHKAAPKLEWFQNVESMLNHHLSGLLGLGCLSWAGHQIHVSLPINKLLDSGVNPAELPLP HDFILDKSLISQLYPSFSKGLAPFFTFHWSEYSDFLTFRGGLNNVTGGLWLTDVAHHHLALAVLFILAGHMYKTNWKIGH DIKGLLESHTGPFTGQGHKGLYEIFTNSWHAQLSLNLAMMGSLSIIVAQHMYSMPPYPYIAIDYGTELSLFTHHYWIGGF CIVGAAAHAAIFMVRDYDPALNFNNLLDRVLLHRDAIISHLNWVCIFLGLHSFGLYIHNDTLSALGRPQDMFSDSAIQLQ PVFAQWIQNTHYLAPTLTAFNLVSPTTPVWGGDVVSISGKVAMMPIKLGTADFLVHHIHAFTIHVTVLILLKGVLFSRSS RLIPDKASLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVAIFHFSWKMQSDVWGTVLANKVSHITGGNFSQGSL TINGWLRDFLWAQSSQVIQSYGSPLSAYGLMFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPNIQPRALSI TQGRAVGVAHYLLGGIATTWSFFLARIISVG P19430 1.97.1.12 Photosystem I P700 chlorophyll a apoprotein A2 Euglena gracilis 0.08272321099999999 1 LEVO MATKFPKFSQGLAQDPTTRRIWFGIATSHDFESHDGMTENNLYQKIFASHFGQLAIIFLWTSGNLFHVAWQGNFEQWIKD PLHIRPIAHAISDPHFGQPAIEAFTRSQFPGPVNIAYSGVYQWWYTIGLRTNVDLYNGSMFLLFIATLALFAGWLHLEPK YSPKVSWFKDAESRLNHHLSALFGLSSLAWSGHLIHVAIPESRGIHVRWDNFLSQLPHPSGLEPFFKGNWSLYSENPDSL THVFGTASGAGTAVLTFLGGFHPETKSLWLTDIAHHHLAIAVLFIVAGHMYRTNFAIGHRIDDILNAHKAPSGKLGLGHF GLYETINNSLHFQLGLALASLGVITSLVAQHMYSLSPYAFLIQDRTTMAALYTHHQYIAGFIMTGAFAHGAIFFIRDFDE EKNKGNVLSRILDHKEAIISHLSWVTLFLGFHTLGLYVHNDVMQAFGTPEKQILIEPVFAQWIQSAHGKNIYELNILLSS DSSNAFSASQAIWLPGWLNGINDKSTSLFLQIGPGDFLVHHAIALGLHTTTLILVKGALDARGSRLMPDKKDFGYSFPCD GPGRGGTCDISAWDAFYLAVFWMLNTIGWTTFYWHWKHITLWQGNVGQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGM NSLAVWGWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPITNVFKWTDKPVALSIVQARLVGLAHFSVGYVFT YAAFLIASTSAKF P19431 1.97.1.12 Photosystem I iron-sulfur center Euglena gracilis 0.008784116 1 LEVO MSHSVKIYNTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCESACPTDFLSVRVYLGSETSRSMGLA Y P31556 1.97.1.12 PsaD Euglena gracilis 0.022389361 1 LEVO MFAETGEKAAKPAWTVPDLADALKNTSAVAKAKGIATQLPTFWELRDALSEVPKSKFPEVFASYKGSTGTLLSAAEKEEK YVITWTSPKKQIFELPTGGAAEMEEGENIFYFARKEQCLALGAQLRTAFKPRIENFQIFRVFPNGEVQYLHPKDGVFPEK VNQGRTKANHNPRSIGENAEPASVKFTGTTPKDVQTEGAVAMF PsaE Euglena gracilis 0.011251521 1 LEVO MITRLADDAAARVADRTQFIEEYKERRAEAPATPKAKAGPARGSTVKVTRPESYWYNQYGKVISVDESGAIRYPVVVRFE KENYQGVTTNNFALDELEY PsaF Euglena gracilis 0.018556313999999997 1 LEVO MPANATEAILGLTPCAESAKFQKVLTKEVKALEKREKLYEPGSAPFQALEATKAKTQARFAKYAESGLLCGADGLPHLIS DPGLAVKYGHAGETLIPTIGFLYVAGYIGTAGRTYLQEISTRQKPTQSEIIIDVPLATSIAFKSWDWPNKAVKELASGTL LEDAKNVPVSRR Photosystem I reaction center subunit IX Euglena gracilis 0.004298091999999999 1 LEVO MKYFTTYLSTAPVVAVLWFTLTASLLIEINRFFPDIL P30394 Photosystem I reaction center subunit XII Euglena gracilis 0.003445077 1 LEVO MEITTNQVYIALLASLIPAFFAFKLGKSLNQ P31479 LHC-1 Euglena gracilis 0.022417451 1 LEVO MLATSGEKRPTWFPGAEAPAWLTGEFPGDRGFDPCGLARDPVDFAKFRDSEVFHGRWAMLGLVGCLVPEVFGNLGIAQLP AWYDAATVANTSNLDYLGNPNLIHASNVSFIALSTLLLMGPVEAWRWNGALASEAKSAERTTYPGGPFDPLKLGASPELK LKEIKNGRLAMVGMFGFWAQSYVTGEGPLANLAAHLADPAHNNLLNTVA Light harvesting chlorophyll a /b binding protein of PSII Euglena gracilis 0.024103516 1 LEVO MFAATGSKWYGPNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGRWAMLGVLGCLAPEVLS NVFGVPYPEPVWFKTGATILNGGSIDYLANPKLIHASNLLLTLVLELVFFFAAETWREAGEGPLGKAQDKSYPGGVFDPL GLSKDPAAFAEAKVKEVKNGRLAMLAMLGLFVQAGVTGQSPLENLSAHLANPGVNFWTSYAPTLA Q39725 LHC-3 Euglena gracilis 0.024694388999999997 1 LEVO MFAATGEKLSDWYGPNRKLFLGPLSDGAPEHLKGELPGDYGFDVLGLATQPTRLERYRQGEIINGRWAMLGIVGCIVPEL LARNYGVPFPEPVWFKTGATVFSEEGLNYLGNPSLIHAKSIAAILVTEILFVGAAEAFRVSGGPLGPATDLVYPGKAFDP LGLSKDETAFAELKVKEVKNGRLAMLGMLGLFMQGFATGKGPLQNLADHLADPTGANIITFHQRVLSDLG Chloroplast light-harvesting complex I protein Euglena gracilis 0.019968424 1 LEVO MFTTTGEKRPVWFPGATPPAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSLIPELQGQGAWYTLS EKQFGPGPNGEVIGFTELALIGMLFSYPLEYWRGNGGFGWFEEKGDRTYPGFDPLQLTSEYTKTAEIKNGRLAMSALLGF AVQHATTGASPLENWAATTGGSVA A8HPE4 Chloroplast light-harvesting complex I protein Euglena gracilis 0.019103708999999996 1 Euglena gracilis LEVO MFAAAGERATWFPGAKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPELLGRGVWFQAGE SVDAAQLGLYFMFLAAPSEYWRGNGGFGWDQKEKKAGNRIYPGFDPLKMTSDETKTKEIKNGRLAMIAFLGLVSQANTTG VSPFQNLAAVFGASPVA A8HPE4 Chloroplast light-harvesting complex I protein Euglena gracilis 0.020021699 1 LEVO MAASSGERLLWIPNATPPAHLTGEFPGDRGFDPLGLSKDPKVFARMRISEVFHGRLAMLGIVGCVGQEWLFNKGAWFDYS DFDLPRLGLIALQVIAPLEYWRGNGGFSWNGNDGPDRSYPGFDPLGLTTEDTKLREIKNGRLAMSAMLGLEVQSHITGKS PLTNLGDHLSSPFTANILTGGGSVA A8HPC6 Chloroplast light-harvesting complex I protein Euglena gracilis 0.021290224999999996 2 LEVO MYSTSGEKYRGLWFPNITPPAYLTGEFPADRGFDPAGLAADPKVYERMRIAEVFNGRLAMLAIVGCVYPELLGNGVWFEV WNKVDFYRFALISLQVVAPLEYWRGNGGFGWDGEEKYDRSYPGFDPCNLTTEYTKAAEIKNGRLAMIGMFGLEVQSHVTA QGPVANLIEHLRHPLAANIGANLAHPWPPVA A8HPD0 LHC-10, 15 Euglena gracilis 0.020346094 2 LEVO MFSTAGQKTDRRPLWFPGGYAPSWLTGQHFGDRGFDPAGLAADPKVFERMRVSEVYHGRLAMLAIVGAVVPDIQGKGAWY EAAQSAGIGVNEVAVFTAAYGIAEVARGLKANSDPTSRYPGFDPLNLTTDYTKEAEIKNGRLALTAMLGLEVQRHVTGVS PLVNLVEHVKHPLGHNIAESVMHQWPVA LHC-11 Euglena gracilis 0.020130817999999998 1 LEVO MAATTGERLLWIPNATPPAHLTGEFPGDRGFDPLGLAKDPKVYQRMRISEVFHGRLAMLGIVGCVAPELFFSKGAWFDYS DYDLNRLGLIALQVIAPLEYWRGNGGFSWDGNDGPDRSYPGFDPLGLTNEETKLQEIKNGRLAMTAMLGLEVQSHITGKS PLTNLSEHLSHPLSANLLTGGGSLA Chloroplast light-harvesting complex I protein Euglena gracilis 0.018443971 4 LEVO MFATTGHKDGVWFPGATPPAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGAIVPEVLGKGAWFEAG NSVDGIKLGFIAMAIAAPTEYWRGNGGFNWDKGAADRSYPGFDPLKLTTDYTKAAEIKNGRLAMAGLLGLTFQYLATGES PLANLAAHLANPVG A8HPD7 CHLOROPHYLL A 0.000893489 244 CLA PHYLLOQUINONE 0.000450696 2 PQN 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 0.00072297 1 LHG (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol 0.000582855 37 DD6 BETA-CAROTENE 0.000536873 13 BCR DODECYL-ALPHA-D-MALTOSIDE 0.000510615 3 LMU 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE 0.0007871579999999999 16 LMG IRON/SULFUR CLUSTER 0.00035163999999999996 3 SF4 DIGALACTOSYL DIACYL GLYCEROL (DGDG) 0.0009492989999999999 1 DGD CHLOROPHYLL B 0.000907472 27 CHL (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL 0.00060087 1 NEX singleParticle particle 6.5 ETHANE FEI TECNAI F30 SPOT SCAN BRIGHT FIELD FIELD EMISSION GUN 300 1.0 1.8 GATAN K3 (6k x 4k) 50.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 2.72 FSC 0.143 CUT-OFF cryoSPARC 78124 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_65121.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 500 500 500 0 0 0 500 500 500 417.2 417.2 417.2 90.0 90.0 90.0 X Y Z -0.46309224 1.4432801 0.0162277 0.03804578 0.8344 0.8344 0.8344 0.22 AUTHOR Cryo-EM structure of euglenophyte photosystem I emd_65121_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 500 500 500 0 0 0 500 500 500 417.2 417.2 417.2 90.0 90.0 90.0 X Y Z -0.7663836 1.0139854 0.0009812105 0.09414646 0.8344 0.8344 0.8344 AUTHOR Cryo-EM structure of euglenophyte photosystem I emd_65121_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 500 500 500 0 0 0 500 500 500 417.2 417.2 417.2 90.0 90.0 90.0 X Y Z -0.75280744 1.1050968 0.00096461864 0.09391957 0.8344 0.8344 0.8344 AUTHOR Cryo-EM structure of euglenophyte photosystem I