Raw consensus map of Type II-A CRISPR integrase prespacer catching complex, State I

2026-05-13 REL PDBc INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY DATA_COLLECTION em_admin _em_admin.last_update EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update PDBj PDBc 2025-06-19 2026-04-01 2026-04-01 2026-05-13 National Natural Science Foundation of China (NSFC) 31970547 China Ministry of Science and Technology (MoST, China) 2018YFA0902000 China National Natural Science Foundation of China (NSFC) 82304614 China Raw consensus map of Type II-A CRISPR integrase prespacer catching complex, State I Li ZX Li YT Lu ML Xiao YB CRISPR, Cas9, Cas1, Csn2 DNA binding protein, DNA BINDING PROTEIN/DNA/RNA, DNA BINDING PROTEIN-DNA-RNA complex Li Z Li Y Kong J Wu Q Huang P Zhang Y Wu W Chen M Liu Y Lin H Hou L Liu G Zeng T He Y Hu C Yang Z Lu M Luo M Xiao Y Structural basis for Cas9-directed spacer acquisition in type II-A CRISPR-Cas systems. Mol.Cell US 86 805 816.e4 2026 41702404 doi:10.1016/j.molcel.2026.01.024 1097-2765 2168 MOCEFL EMD-65230 focused EM volume

Focused map of Type II-A CRISPR integrase prespacer catching complex, State I

EMD-65231 other EM volume

Composite map of Type II-A CRISPR integrase prespacer catching complex, State I

9vj9 FULLOVERLAP EMDB EMD-65107 associated EM volume

Type I-A CRISPR integrase prespacer catching complex, State I

EMDB EMD-65230 focused EM volume

Focused map of Type II-A CRISPR integrase prespacer catching complex, State I

EMDB EMD-65231 other EM volume

Composite map of Type II-A CRISPR integrase prespacer catching complex, State I

E. faecalis Type II-A CRISPR integrase prespacer catching complex, State I E. faecalis Type II-A CRISPR integrase prespacer catching complex, State I 0 3 7 4 5 6 2 1 Enterococcus faecalis Type II-A CRISPR-associated protein Csn2 Enterococcus faecalis 0.02543309 4 Escherichia coli LEVO MRVNFSLLEEPIEIEKATFLTIKDVQTFAHLVKLIYQYDGENELKLFDAQQKGLKPTELFVVTDILGYDVNSAATLKLIY GDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGITVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSK KKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEKA A0A3N3GYE7 CRISPR-associated endonuclease Cas1 Enterococcus faecalis 0.033492625 2 Escherichia coli LEVO MGWRTVVVNKHSKLSYKNNHLVFKAIDHQELIHLSEIDVLLLETTDISLTTMLLKRLIDEKILVLFCDDKRLPIGKILPF YGRHDSSLQLTRQLAWTEERKGQVWTAIIAQKITNQSLHLAQRDYGQKAAALLAMRAELRLFDPANREGHAARSYFNTLF GNDFTREQENDINAGLNYGYTLLLSIFARELVQTGCFTQLGLKHANQFNDFNLASDLMEPFRPLVDQIIYENRKEAFPIM KRKLFALFMNTYMYKKKQMFLTNIATDYTKHVVKVLNQEEEGVPEFGI A0A3N3GDE4 3.1.-.- DNA (51-MER) synthetic construct 0.015774186 1 (DA)(DG)(DC)(DG)(DC)(DT)(DC)(DT)(DG)(DA)(DA)(DT)(DG)(DC)(DT)(DA)(DG)(DA)(DT)(DC) (DA)(DC)(DG)(DT)(DT)(DA)(DT)(DG)(DA)(DA)(DA)(DC)(DA)(DG)(DA)(DC)(DA)(DT)(DA)(DG) (DC)(DG)(DG)(DT)(DA)(DC)(DA)(DA)(DA)(DA)(DA) DNA DNA (51-MER) synthetic construct 0.015644021 1 (DT)(DT)(DT)(DT)(DT)(DG)(DT)(DA)(DC)(DC)(DG)(DC)(DT)(DA)(DT)(DG)(DT)(DC)(DT)(DG) (DT)(DT)(DT)(DC)(DA)(DT)(DA)(DA)(DC)(DG)(DT)(DG)(DA)(DT)(DC)(DT)(DA)(DG)(DC)(DA) (DT)(DT)(DC)(DA)(DG)(DA)(DG)(DC)(DG)(DC)(DT) DNA RNA (55-MER) synthetic construct 0.017561324 1 GCAAUACUUUGUCUGUAUCGUUUUAGAGUCAUGUUGUUUAGAAUGGUACCAAAAC RNA (83-MER) synthetic construct 0.026614761999999997 1 CUUUUGGGACUAUUCUAAACAACAUAGCAAGUUAAAAUAAGGUUUUAACCGUAAUCAACUGUAAAGUGGCGCUGUUUCGG CGC CRISPR-associated endonuclease Cas9 Enterococcus faecalis 0.155565297 1 Escherichia coli LEVO MKKDYVIGLDIGTNSVGWAVMTEDYQLVKKKMPIYGNTEKKKIKKNFWGVRLFEEGHTAEDRRLKRTARRRISRRRNRLR YLQAFFEEAMTDLDENFFARLQESFLVPEDKKWHRHPIFAKLEDEVAYHETYPTIYHLRKKLADSSEQADLRLIYLALAH IVKYRGHFLIEGKLSTENISVKEQFQQFMIIYNQTFVNGESRLVSAPLPESVLIEEELTEKASRTKKSEKVLQQFPQEKA NGLFGQFLKLMVGNKADFKKVFGLEEEAKITYASESYEEDLEGILAKVGDEYSDVFLAAKNVYDAVELSTILADSDKKSH AKLSSSMIVRFTEHQEDLKKFKRFIRENCPDEYDNLFKNEQKDGYAGYIAHAGKVSQLKFYQYVKKIIQDIAGAEYFLEK IAQENFLRKQRTFDNGVIPHQIHLAELQAIIHRQAAYYPFLKENQEKIEQLVTFRIPYYVGPLSKGDASTFAWLKRQSEE PIRPWNLQETVDLDQSATAFIERMTNFDTYLPSEKVLPKHSLLYEKFMVFNELTKISYTDDRGIKANFSGKEKEKIFDYL FKTRRKVKKKDIIQFYRNEYNTEIVTLSGLEEDQFNASFSTYQDLLKCGLTRAELDHPDNAEKLEDIIKILTIFEDRQRI RTQLSTFKGQFSAEVLKKLERKHYTGWGRLSKKLINGIYDKESGKTILGYLIKDDGVSKHYNRNFMQLINDSQLSFKNAI QKAQSSEHEETLSETVNELAGSPAIKKGIYQSLKIVDELVAIMGYAPKRIVVEMARENQTTSTGKRRSIQRLKIVEKAMA EIGSNLLKEQPTTNEQLRDTRLFLYYMQNGKDMYTGDELSLHRLSHYDIDHIIPQSFMKDDSLDNLVLVGSTENRGKSDD VPSKEVVKDMKAYWEKLYAAGLISQRKFQRLTKGEQGGLTLEDKAHFIQRQLVETRQITKNVAGILDQRYNANSKEKKVQ IITLKASLTSQFRSIFGLYKVREVNDYHHGQDAYLNCVVATTLLKVYPNLAPEFVYGEYPKFQTFKENKATAKAIIYTNL LRFFTEDEPRFTKDGEILWSNSYLKTIKKELNYHQMNIVKKVEVQKGGFSKESIKPKGPSNKLIPVKNGLDPQKYGGFDS PIVAYTVLFTHEKGKKPLIKQEILGITIMEKTRFEQNPILFLEEKGFLRPRVLMKLPKYTLYEFPEGRRRLLASAKEAQK GNQMVLPEHLLTLLYHAKQCLLPNQSESLAYVEQHQPEFQEILERVVDFAEVHTLAKSKVQQIVKLFEANQTADVKEIAA SFIQLMQFNAMGAPSTFKFFQKDIERARYTSIKEIFDATIIYQSTTGLYETRRKVVD A0A3N3HFT9 3.1.-.- singleParticle particle 7.5 ETHANE TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.0 2.4 130000.0 FEI FALCON IV (4k x 4k) 45.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 2.96 FSC 0.143 CUT-OFF cryoSPARC 136878 RANDOM ASSIGNMENT RANDOM ASSIGNMENT emd_65107.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 357.888 357.888 357.888 90.0 90.0 90.0 X Y Z -0.0043593664 2.0358155 0.00094085623 0.020782616 0.932 0.932 0.932 0.143 AUTHOR ::::EMDATABANK.org::::EMD-65107:::: emd_65107_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 357.888 357.888 357.888 90.0 90.0 90.0 X Y Z -0.4303642 1.1735165 0.0004254731 0.038663063 0.932 0.932 0.932 AUTHOR ::::EMDATABANK.org::::EMD-65107:::: emd_65107_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 357.888 357.888 357.888 90.0 90.0 90.0 X Y Z -0.52084184 1.197464 0.00043034132 0.03870639 0.932 0.932 0.932 AUTHOR ::::EMDATABANK.org::::EMD-65107:::: emd_65107_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 357.888 357.888 357.888 90.0 90.0 90.0 X Y Z -0.52084184 1.197464 0.00043034132 0.03870639 0.932 0.932 0.932 AUTHOR ::::EMDATABANK.org::::EMD-65107:::: emd_65107_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 357.888 357.888 357.888 90.0 90.0 90.0 X Y Z -1.0389885 1.3357754 0.00043034134 0.11817773 0.932 0.932 0.932 AUTHOR ::::EMDATABANK.org::::EMD-65107:::: emd_65107_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 357.888 357.888 357.888 90.0 90.0 90.0 X Y Z -1.0645244 1.3873868 0.00042547312 0.118110724 0.932 0.932 0.932 AUTHOR ::::EMDATABANK.org::::EMD-65107::::