REL RCSB RCSB RCSB 2015-10-19 2015-11-18 2015-11-18 2015-12-09 Cryo-electron microscopy structure of RAG PC (C2 symmetry) Ru H Chambers MG Fu T Tong AB Liao M Wu H RAG1, RAG2, V(D)J recombination, Paired complex, Antigen receptor recombination, T and B cell development Ru H Chambers MG Fu TM Tong AB Liao M Wu H Molecular Mechanism of V(D)J Recombination from Synaptic RAG1-RAG2 Complex Structures. CELL(CAMBRIDGE,MASS.) 163 1138 1152 2015 26548953 doi:10.1016/j.cell.2015.10.055 3jby FULLOVERLAP Paired Complex of RAG1-RAG2 Paired Complex of RAG1-RAG2
The sample was monodisperse.
Dimer of RAG1-RAG2 binds to nicked 12-RSS and 23-RSS intermediates with HMGB1 1 0.4 0.4 Size exclusion chromatography Recombination Activating Gene 1 and 2 Danio rerio AB Zebrafish B and T lymphocytes Nucleus 0.4 0.4 2 Dimer of RAG1-RAG2 true Spodoptera frugiperda Sf9 pFastBac1 O13033 GO:0003677 GO:0004519 GO:0004842 GO:0005515 GO:0008270 GO:0003677 GO:0003682 GO:0005515 GO:0005546 GO:0005547 IPR024627 IPR023336 IPR018957 IPR001841 IPR013083 IPR017907 IPR011043 IPR015915 IPR004321 IPR025162 IPR011011 singleParticle particle 0.4 7.5
150 mM NaCl, 20 mM HEPES, 10 mM CaCl2, 1 mM TCEP
400 mesh Quantifoil holey carbon grid, glow discharged
 ETHANE 85 120 GATAN CRYOPLUNGE 3 Blot for 2.5 seconds before plunging. FEI POLARA 300 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.0 1.5 2.5 31000.0 40607.0 GATAN LIQUID NITROGEN 80 105 100 Objective lens astigmatism was corrected at 150,000 times magnification 2015-03-10 GATAN K2 (4k x 4k) 550 41
Every image is the average of 30 frames recorded by the direct electron detector.
8.
Image processing was carried out using SAMUEL and Relion.
Each particle
 OTHER 3.7 OTHER SPIDER, Relion 42486 emd_6488.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 192 192 192 0 0 0 192 192 192 236.16 236.16 236.16 90.0 90.0 90.0 Z Y X -0.0855163 0.16841216 -0.00008954 0.00818593 1.23 1.23 1.23 0.04 AUTHOR Reconstruction of RAG PC with C2 symmetry
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emd_6488.png
emd_6488_msk_1.map emd_6488_msk_1.map 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 192 192 192 0 0 0 192 192 192 236.16 236.16 236.16 90.0 90.0 90.0 Z Y X 0.0 1.0 0.03571241 0.17501742 1.23 1.23 1.23 This mask represents the whole molecule.
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 emd_6488_fsc.xml