REL RCSB RCSB RCSB 2015-09-17 2015-10-07 2015-10-07 2015-11-25 Single particle reconstruction of AAV-DJ in complex with ARIXTRA Spear JM Noble AJ Xie Q Sousa DR Chapman MS Stagg SM gene therapy Spear JM Noble AJ Xie Q Sousa DR Chapman MS Stagg SM The Influence of Frame Alignment with Dose Compensation on the Quality of Single Particle Reconstructions J.STRUCT.BIOL. 192 196 203 2015 26391007 doi:10.1016/j.jsb.2015.09.006 Adeno-associated virus Adeno-associated virus 60 viral subunits form the icosahedral capsid 2 3.75 Adeno-associated virus Adeno-associated virus Homo sapiens VERTEBRATES Spodoptera frugiperda SF9 bacmid 3.75 Shell 1 250 1 VIRUS-LIKE PARTICLE SEROTYPE false true DJ Fondaparinux unidentified 0.001727
Arixtra was added in a 10X molar excess to AAV-DJ monomers
false singleParticle particle 0.6 7.4
50mM HEPES, 25mM MgCl2, 25mM NaCl
R2/2 200 mesh copper grids that were rendered hydrophilic in 75/25 % Ar/O.
 ETHANE 100 120 FEI VITROBOT MARK IV
3ul of 0.6 mg/ml AAV-DJ was applied to grid and then hand blotted. After initial hand blotting, 3ul of 5.7mM Arixtra was added, the grid was mechanically blotted, and then vitrified.
blot force = 1, blot time = 3 seconds, total blots = 1. FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.75 3.0 29000.0 49383.0 FEI TITAN KRIOS AUTOGRID HOLDER 93 Astigmatism was corrected at 155000 times magnification 2015-01-06 DIRECT ELECTRON DE-20 (5k x 3k) 1051 66
every image is the sum of 45 frames
16. liquid nitrogen cooled
Particles were picked using an automatic selection program. Particles over carbon were manually deselected.
by image
 OTHER 2.8 OTHER EMAN, Frealign 120166 emd_6470.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 432 432 432 0 0 0 432 432 432 524.88 524.88 524.88 90.0 90.0 90.0 X Y Z -0.30731693 0.56448966 -0.01868093 0.02429028 1.215 1.215 1.215 0.09 AUTHOR Reconstruction of adeno-associated virus variant DJ in complex with Arixtra
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 emd_6470_fsc.xml