REL RCSB RCSB RCSB 2015-08-11 2015-09-23 2015-10-07 2015-11-25 The U4 antibody epitope on human papillomavirus 16 identified by cryo-EM Guan J Bywaters SM Brendle SA Lee H Ashley RE Christensen ND Hafenstein S HPV16, Cryo-EM, antibody, U4, neutralization, Fab Guan J Bywaters SM Brendle SA Lee H Ashley RE Christensen ND Hafenstein S The U4 antibody epitope on human papillomavirus 16 identified by cryo-EM J.VIROL. 89 12108 12117 2015 26401038 doi:10.1128/JVI.02020-15 Quasi-HPV16 Quasi-HPV16 1 29.8 Human papillomavirus type 16 Human papillomavirus type 16 Homo sapiens VERTEBRATES Homo sapiens HEK293TT SV40 29.8 L1 L2 590 7 VIRUS-LIKE PARTICLE SEROTYPE false false HPV16 singleParticle particle 1.0 7.4
1 M NaCl, 200 mM Tris
glow-discharged holey carbon support grid
 ETHANE 90 102 GATAN CRYOPLUNGE 3 JEOL 2100 SPOT SCAN BRIGHT FIELD LAB6 200 2 0.84 3.05 80000.0 GATAN LIQUID NITROGEN 95 2009-09-04 GATAN ULTRASCAN 4000 (4k x 4k) 297 15
The particles were selected using semi-automatic program e2boxer.py (EMAN2).
each particle
 OTHER 13.0 OTHER auto3dem, RELION, EMAN2
Semi-automatic particle selection was performed using e2boxer.py, followed by particle boxing, linearization, normalization, and apodization of the images using Robem. Defocus and astigmatism values for contrast transfer function (CTF) correction were assessed for the extracted particles using ctffind3. The icosahedrally-averaged reconstruction was initiated using a random model generated with setup_rmc and reached 13 A resolution (FSC 0.5, RELION).
1895 emd_6423.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 480 480 480 -240 -240 -240 480 480 480 710.4 710.4 710.4 90.0 90.0 90.0 X Y Z -2.01456308 4.23273659 0.00000001 1.0 1.48 1.48 1.48 1.0 AUTHOR Quasi-HPV16
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