2025-12-17 REL PDBc INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY STRUCTURE_SUMMARY audit_author em_admin em_author_list _em_admin.last_update EXPERIMENTAL_SUMMARY em_admin em_author_list _em_admin.last_update PDBj PDBc 2025-04-11 2025-12-10 2025-12-10 2025-12-17 Not funded Structure of SARS-CoV-2 spike-CD147 complex at 3.75 Angstroms resolution Zhang SJ Yang ZW Lin P Bian HJ Zhu P Zhang L Chen ZN SARS-CoV-2 Spike, CD147-ECD, Spike-CD147 complex, VIRAL PROTEIN/IMMUNE SYSTEM, VIRAL PROTEIN-IMMUNE SYSTEM complex Zhang SJ Yang ZW Structure of SARS-CoV-2 spike-CD147 complex at 3.75 Angstroms resolution To Be Published 0353 9ug3 FULLOVERLAP EMDB EMD-64131 associated EM volume
Structure of SARS-CoV-2 spike-CD147 complex at 3.75 Angstroms resolution
 Structure of SARS-CoV-2 spike protein with an RBD in the up conformation bound to CD147 Structure of SARS-CoV-2 spike protein with an RBD in the up conformation bound to CD147 0 1 2 Homo sapiens Spike glycoprotein Severe acute respiratory syndrome coronavirus 2 0.123797039 3 Homo sapiens environmental sample LEVO AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIF GTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNF KNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYY VGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATR FASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQ PYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILD ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI GAGICASYQTQTNSPGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDS TECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRF NGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDP PEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVT YVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD P0DTC2 Basigin Homo sapiens 0.019846143 1 Homo sapiens environmental sample LEVO AGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLH GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ YRCNGTSSKGSDQAIITLRVR P35613 singleParticle particle 0.23 7.4
Pbs
 Quantifoil R1.2/1.3 GOLD 300 GOLD HOLEY GLOW DISCHARGE AIR
The two solutions were incubated for 0.5 hours at 25 degrees centigrade in the PBS buffer, flash-frozen in liquid nitrogen, and stored at -80 degrees centigrade.
 TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.2 2.5 96000.0 96000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON III (4k x 4k) 1.14 53.55 1 641033 PHASE FLIPPING AND AMPLITUDE CORRECTION
Generated from 2D class averages.
 1 C1 FOURIER SPACE 3.75 FSC 0.143 CUT-OFF RELION 3.1.2 62906 RANDOM ASSIGNMENT MAXIMUM LIKELIHOOD 3 63219.0
189, 656 particles selected for the SARS-CoV-2 spike-CD147 complex were determined the initial models and were 3D classified with 3 classes.
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