REL RCSB RCSB RCSB 2015-07-17 2015-09-23 2016-04-20 2016-04-20 A new view of essential vertex proteins on herpesvirus capsids observed inside intact virions Huet A Makhov AM Huffman JB Vos M Homa FL Conway JF Pseudorabies virus, PRV, capsid, virion, CVSC, pUL17, pUL25, pUL36 Huet A Makhov AM Huffman JB Vos MR Homa F Conway JF Extensive subunit contacts underpin herpesvirus capsid stability and interior-to-exterior allostery. Nat.Struct.Mol.Biol. 2016 doi:10.1038/nsmb.3212 Capsid of pseudorabies virus imaged in intact virions Capsid of pseudorabies virus imaged in intact virions Icosahedral T=16 1 200 200 Suid herpesvirus 1
Native Becker
Suid herpesvirus 1 Sus scrofa VERTEBRATES Chlorocebus aethiops green monkey kidney (Vero) cells 200 200 1250 16 VIRION SPECIES true false singleParticle particle
Quantifoil R2/1
 ETHANE 90 120 FEI VITROBOT MARK IV 6 second blot FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.0 5.0 75000.0 81000.0 FEI TITAN KRIOS AUTOGRID HOLDER Objective lens astigmatism was corrected at 75,000x magnification.
Nanoprobe
2013-04-14 FEI FALCON II (4k x 4k) 14 32956 30
2 second exposures; no use of movie mode
 Nitrogen cooled
Manual selection, processing with AUTO3DEM
By micrograph
 OTHER 7.2 OTHER AUTO3DEM, CTFFIND3
Final map calculated from 25637 images of capsids inside virions. Resolution was verified by comparing cryoEM data with band-limited renditions of the HSV VP5 upper domain fragment, PDB 1NO7.
13242 emd_6387.map.gz 1 IMAGE STORED AS SIGNED INTEGER (2 BYTES) 749 749 749 0 0 0 749 749 749 1617.8401 1617.8401 1617.8401 90.000084 90.000084 90.000084 X Y Z -17559.0 32443.0 1084.363403320000089 3472.1518554700001 2.16 2.16 2.16 8000.0 AUTHOR Reconstruction of pseudorabies virus capsid imaged inside virions
::::EMDATABANK.org::::EMD-6387::::
 1NO7 A RIGID BODY FIT Chimera
Manual docking
REAL
emd_6387.tif
emd_6387_1.tif