2026-07-01 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY DATABASE_REFERENCES citation em_admin _citation.journal_volume _em_admin.last_update EXPERIMENTAL_SUMMARY citation em_admin _citation.journal_volume _em_admin.last_update PDBj PDBj 2025-02-20 2026-04-15 2026-04-15 2026-07-01 Japan Agency for Medical Research and Development (AMED) JP22ama121003 Japan Japan Society for the Promotion of Science (JSPS) 24K10218 Japan Japan Society for the Promotion of Science (JSPS) 23K14519 Japan Composite map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12 Oki H Kawahara K Collagenase, Hathewaya histolytica, Clostridium histolyticum, METAL BINDING PROTEIN Oki H Takebe K Bonsu A Fujii K Masuda R Henderson N Mima T Koide T Moradi M Matsushita O Sakon J Kawahara K Bacterial collagenase harnesses collagen geometry for processive cleavage. Nat Commun UK 17 2026 41927550 doi:10.1038/s41467-026-71099-3 2041-1723 EMD-63508 consensus EM volume EMD-63509 focused EM volume EMD-63510 focused EM volume 9lyi FULLOVERLAP EMDB EMD-63508 consensus EM volume EMDB EMD-63509 focused EM volume EMDB EMD-63510 focused EM volume EMDB EMD-63511 associated EM volume
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12
 ColH-(POG)12 complex ColH-(POG)12 complex 0 1 2 Hathewaya histolytica Collagenase ColH Hathewaya histolytica 0.112305172 1 Escherichia coli LEVO GSVQNESKRYTVSYLKTLNYYDLVDLLVKTEIENLPDLFQYSSDAKEFYGNKTRMSFIMDEIGRRAPQYTEIDHKGIPTL VEVVRAGFYLGFHNKELNEINKRSFKERVIPSILAIQKNPNFKLGTEVQDKIVSATGLLAGNETAPPEVVNNFTPILQDC IKNIDRYALDDLKSKALFNVLAAPTYDITEYLRATKEKPENTPWYGKIDGFINELKKLALYGKINDNNSWIIDNGIYHIA PLGKLHSNNKIGIETLTEVMKVYPYLSMQHLQSADQIKRHYDSKDAEGNKIPLDKFKKEGKEKYCPKTYTFDDGKVIIKA GARVEEEKVKRLYWASKEVNSQFFRVYGIDKPLEEGNPDDILTMVIYNSPEEYKLNSVLYGYDTNNGGMYIEPEGTFFTY EREAQESTYTLEELFRHQYTHYLQGRYAVPGQWGRTKLYDNDRLTWYEEGGAELFAGSTRTSGILPRKSIVSNIHNTTRN NRYKLSDTVHSKYGASFEFYNYACMFMDYMYNKDMGILNKLNDLAKNNDVDGYDNYIRDLSSNYALNDKYQDHMQERIDN YENLTVPFVADDYLVRHAYKNPNEIYSEISEVAKLKDAKSEVKKSQYFSTFTLRGSYTGGASKGKLEDQKAMNKFIDDSL KKLDTYSWSGYKTLTAYFTNYKVDSSNRVTYDVVFHGYLPNEGDSKNSLPYGKINGTYKGTEKEKIKFSSEGSFDPDGKI VSYEWDFGDGNKSNEENPEHSYDKVGTYTVKLKVTDDKGESSVSTTTAEIKDLSENKLPVIYMHVPKSGALNQKVVFYGK GTYDPDGSIAGYQWDFGDGSDFSSEQNPSHVYTKKGEYTVTLRVMDSSGQMSEKTMKIKITDPVYPIGTEKEPNNSKETA SGPIVPGIPVSGTIENTSDQDYFYFDVITPGEVKIDINKLGYGGATWVVYDENNNAVSYATDDGQNLSGKFKADKPGRYY IHLYMFNGSYMPYRINIEGSVGR Q46085 3.4.24.3 (Pro-Hyp-Gly)12 Homo sapiens 0.00322539 3 LEVO P(HYP)GP(HYP)GP(HYP)GP(HYP)GP(HYP)GP(HYP)GP(HYP)GP(HYP)GP(HYP)GP(HYP)GP(HYP)GP (HYP)G CALCIUM ION 4.0078e-05 2 CA ZINC ION 6.5409e-05 1 ZN water 1.8015e-05 74 HOH singleParticle particle 1 7.5 ETHANE JEOL CRYO ARM 300 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.7000000000000001 2.2 GATAN K3 (6k x 4k) 80.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 2.8 OTHER cryoSPARC 318280 ANGULAR RECONSTITUTION ANGULAR RECONSTITUTION emd_63511.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 240 240 240 0 0 0 240 240 240 206.16 206.16 206.16 90.0 90.0 90.0 Z Y X -0.84092087 1.9236292 0.000045744262 0.05464732 0.859 0.859 0.859 0.3 AUTHOR AB INITIO MODEL emd_63511_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 240 240 240 0 0 0 240 240 240 206.16 206.16 206.16 90.0 90.0 90.0 Z Y X -1.9824444 2.5145774 0.000013788295 0.054275185 0.859 0.859 0.859 AUTHOR Composite map of sharpening map emd_63511_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 240 240 240 0 0 0 240 240 240 206.16 206.16 206.16 90.0 90.0 90.0 Z Y X -0.55724657 1.1806245 -0.00015990897 0.033361625 0.859 0.859 0.859 AUTHOR emd_63511_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 240 240 240 0 0 0 240 240 240 206.16 206.16 206.16 90.0 90.0 90.0 Z Y X -0.59163296 1.2194071 -0.00017170714 0.03335857 0.859 0.859 0.859 AUTHOR