REL RCSB RCSB RCSB 2015-05-20 2015-06-03 2016-05-04 2016-05-04 Electron cryo-microscopy of a BRCA1-RNAPII transcriptional complex Gilmore BL Winton CE Demmert AC Tanner JR Bowman S Karageorge V Patel K Sheng Z Kelly DF transcription, DNA repair, cancer, mRNA, tumor suppressor, ubiquitin ligase Gilmore BL Winton CE Demmert AC Tanner JR Bowman S Karageorge V Patel K Sheng Z Kelly DF A Molecular Toolkit to Visualize Native Protein Assemblies in the Context of Human Disease. Sci. Rep. 5 14440 14440 2015 26395823 doi:10.1038/srep14440 Walmacq C Cheung AC Kireeva ML Lubkowska L Ye C Gotte D Strathern JN Carell T Cramer P Kashlev M Mechanism of translesion transcription by RNA polymerase II and its role in cellular resistance to DNA damage MOLECULAR CELL 46 18 29 2012 22405652 doi:10.1016/j.molcel.2012.02.006 Brzovic PS Rajagopal P Hoyt DW King MC Klevit RE Structure of a BRCA1-BARD1 heterodimeric RING-RING complex NAT.STRUCT.BIOL. 8 833 837 2001 11573085 doi:10.1038/nsb1001-833 Williams RS Green R Glover JN Crystal structure of the BRCT repeat region from the breast cancer-associated protein BRCA1 NAT.STRUCT.BIOL. 8 838 842 2001 11573086 doi:10.1038/nsb1001-838 Vijay-Kumar S Bugg CE Cook WJ Structure of ubiquitin refined at 1.8 A resolution J.MOL.BIOL. 194 531 544 1987 3041007 doi:10.1016/0022-2836(87)90679-6 Gilmore BL Winton CE Demmert AC Tanner JR Bowman S Karageorge V Patel K Sheng Z Kelly DF A Molecular Toolkit to Visualize Native Protein Assemblies in the Context of the Human Disease Journal of Scientific Reports Grunberg S Warfield L Hahn S Architecture of the RNA polymerase II preinitiation complex and mechanism of ATP-dependent promoter opening NAT.STRUCT.MOL.BIOL. 19 788 796 2012 22751016 doi:10.1038/nsmb.2334 BRCA1-RNAP II transcriptional assemblies isolated from hereditary breast cancer cells BRCA1-RNAP II transcriptional assemblies isolated from hereditary breast cancer cells one BRCA1 molecule binds to one polymerase complex 5 0.8 RNA Polyermase II core Homo sapiens human breast tumor nucleus nucleus 0.5 1 false P24928 BRCA1 Homo sapiens human breast tumor nucleus nucleus 0.2
BRCA1 was attached to tunable microchips using antibodies against the BRCA1 C-terminal domain
1 monomer false P38398 BARD1 Homo sapiens human breast tumor nucleus nucleus 0.087 1 monomer false Q99728 Ubiqutin Homo sapiens human breast tumor nucleus nucleus 0.008 2 monomer false P0CG48 DNA Homo sapiens human DNA DOUBLE HELIX false singleParticle particle 7.5
50 mM HEPES, 150 mM NaCl, 10 mM MgCl2, 10 mM CaCl2
 NEGATIVE
Protein complexes were adsorbed to antibody-decorated microchips for 2 minutes and stained with 1% uranyl formate for 1 minute.
SiN microchips with TEM windows coated with 25% Ni-NTA functionalized lipid monolayers
 ETHANE 90 93 GATAN CRYOPLUNGE 3 Microchips were blotted for ~8 seconds using one-sided blotting. FEI TECNAI SPIRIT FLOOD BEAM BRIGHT FIELD LAB6 120 2 -1.0 -3.0 50000.0 54500.0 GATAN LIQUID NITROGEN 83 Objective lens astigmatism was corrected at high magnification.
low-dose illumination
2013-03-08 FEI EAGLE (2k x 2k) 30 50 5
The particles were selected using an automatic selection program.
Each particle
 OTHER 22.0 OTHER RELION 22000 5 emd_6340.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 60 60 60 0 0 0 60 60 60 330.0 330.0 330.0 90.0 90.0 90.0 X Y Z -0.04934045 0.27780649 0.00200953 0.01158097 5.5 5.5 5.5 0.02 AUTHOR Reconstruction of BRCA1-RNAPII transcriptional complexes derived from human breast cancer cells
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 4A93 A B C D E F G H I J K L RIGID BODY FIT Chimera
The domains were separately fitted by manual docking using the Chimera software package.
REAL 1UBQ A RIGID BODY FIT Chimera
The domains were separately fitted by manual docking using the Chimera software package.
REAL 1JNX A RIGID BODY FIT Chimera
The domains were separately fitted by manual docking using the Chimera software package.
REAL 1JM7 A B RIGID BODY FIT Chimera
The domains were separately fitted by manual docking using the Chimera software package.
REAL