<emd emdb_id="EMD-6268" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2015-02-14</deposition>
            <header_release>2015-04-08</header_release>
            <map_release>2015-04-08</map_release>
            <update>2015-04-29</update>
        </key_dates>
        <title>Human TRPA1 ion channel with double antagonist HC030031/A967079</title>
        <authors_list>
            <author>Paulsen CE</author>
            <author>Armache J-P</author>
            <author>Gao Y</author>
            <author>Cheng Y</author>
            <author>Julius D</author>
        </authors_list>
        <keywords>TRPA1, TRP, ion, ion channel</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Paulsen CE</author>
                    <author order="2">Armache JP</author>
                    <author order="3">Gao Y</author>
                    <author order="4">Cheng Y</author>
                    <author order="5">Julius D</author>
                    <title>Structure of the TRPA1 ion channel suggests regulatory mechanisms.</title>
                    <journal>NATURE</journal>
                    <volume>520</volume>
                    <first_page>511</first_page>
                    <last_page>517</last_page>
                    <year>2015</year>
                    <external_references type="PUBMED">25855297</external_references>
                    <external_references type="DOI">doi:10.1038/nature14367</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
    </crossreferences>
    <sample>
        <name>Recombinant human TRPA1 treated with HC03031 and A967079</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>Recombinant human TRPA1 treated with HC03031 and A967079</name>
                <details>The sample was monodisperse.</details>
                <oligomeric_state>tetramer</oligomeric_state>
                <number_unique_components>1</number_unique_components>
                <molecular_weight>
                    <theoretical units="MDa">0.688</theoretical>
                </molecular_weight>
            </sample_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name synonym="Transient receptor potential cation channel, member A1">TRPA1</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                    <synonym_organism>Human</synonym_organism>
                </natural_source>
                <molecular_weight>
                    <experimental units="MDa">0.172</experimental>
                    <theoretical units="MDa">0.172</theoretical>
                </molecular_weight>
                <number_of_copies>4</number_of_copies>
                <oligomeric_state>tetramer</oligomeric_state>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                    <recombinant_cell>HEK293 GnTi-</recombinant_cell>
                </recombinant_expression>
                <sequence>
                    <external_references type="UNIPROTKB">O75762</external_references>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">0.5</concentration>
                    <buffer>
                        <ph>8.0</ph>
                        <details>20 mM HEPES, 150 mM NaCl, 1 mM DTT, 1 mM IP6</details>
                    </buffer>
                    <grid>
                        <details>400 mesh holey carbon</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">100</chamber_humidity>
                        <chamber_temperature units="K">120</chamber_temperature>
                        <instrument>FEI VITROBOT MARK I</instrument>
                        <method>Blot for 7 seconds before plunging.</method>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI POLARA 300</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_cs units="mm">2.0</nominal_cs>
                    <nominal_defocus_min units="&#181;m">1.5</nominal_defocus_min>
                    <nominal_defocus_max units="&#181;m">2.8</nominal_defocus_max>
                    <nominal_magnification>31000.0</nominal_magnification>
                    <calibrated_magnification>31000.0</calibrated_magnification>
                    <specimen_holder_model>OTHER</specimen_holder_model>
                    <details>Gatan K2 Summit in super-resolution counting mode. Motion correction as described in Li et al. (2013) Nature Methods.</details>
                    <date>2014-06-04</date>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="CCD">GATAN K2 (4k x 4k)</film_or_detector_model>
                            <number_real_images>708</number_real_images>
                            <average_electron_dose_per_image units="e/&#8491;^2">21</average_electron_dose_per_image>
                            <details>Every image is the average of 30 frames recorded using the K2 Summit. The final reconstruction was calculated from images motion-corrected and weighted using the method described in Scheres 2014.</details>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <details>The particles were selected using an automatic selection program and manually screened. Defocus was calculated using CTFFIND3. Data were processed and refined using RELION 1.3.</details>
                <ctf_correction>
                    <details>Each particle</details>
                </ctf_correction>
                <final_reconstruction>
                    <algorithm>OTHER</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">3.92</resolution>
                    <resolution_method>OTHER</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                        </software>
                    </software_list>
                    <number_images_used>20742</number_images_used>
                </final_reconstruction>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="105470">
        <file>emd_6268.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>300</col>
            <row>300</row>
            <sec>300</sec>
        </dimensions>
        <origin>
            <col>-150</col>
            <row>-150</row>
            <sec>-150</sec>
        </origin>
        <spacing>
            <x>300</x>
            <y>300</y>
            <z>300</z>
        </spacing>
        <cell>
            <a units="&#8491;">364.68</a>
            <b units="&#8491;">364.68</b>
            <c units="&#8491;">364.68</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-11.18746185</minimum>
            <maximum>19.72781372</maximum>
            <average>0.0</average>
            <std>1.0</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">1.2156</x>
            <y units="&#8491;">1.2156</y>
            <z units="&#8491;">1.2156</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>9.0</level>
                <source>EMDB</source>
            </contour>
        </contour_list>
        <annotation_details>Reconstruction of hTRPA1 treated with HC03031 and A967079: summed half-maps, unfiltered and unsharpened. Two associated maps are low-pass filtered and negative-B-factor sharpened.</annotation_details>
        <details>::::EMDATABANK.org::::EMD-6268::::</details>
    </map>
    <interpretation>
        <figure_list>
            <figure>
                <file>emd_6268.png</file>
            </figure>
        </figure_list>
    </interpretation>
</emd>