2025-08-20 REL PDBc INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY DATABASE_REFERENCES citation citation_author em_admin _citation.country _citation.journal_abbrev _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _em_admin.last_update PDBj PDBc 2024-10-19 2025-08-13 2025-08-13 2025-08-20 Other government 23QA1406400 China The structure of Salmonella phage PJNS002 Hu WL Chen YB Wei YM Gao Y structual proteins, VIRUS Hu W Liu Z Wei Y Bian Q Lan W Fan C Song J Sun Q Zhang X Liu Y Gao Y Chen Y Structural basis for Salmonella infection by two Microviridae phages. Commun Biol UK 8 1166 1166 2025 40770068 doi:10.1038/s42003-025-08595-7 2399-3642 9k3n FULLOVERLAP EMDB EMD-62023 associated EM volume
The structure of Microviridae PJNS002
 Microviridae Salmonella phage PJNS002 0 1 2 3
T=1 icosahedral virus
Salmonella phage PJNS002 Salmonella 4.31 290.0 1 VIRION SPECIES false true capsid protein F Salmonella phage PJNS002 0.048418332 60 LEVO MSNVQTSAQRDRIDLSHLGFLSGQIGRLKTVSFSPVIAGDSFELDAVGALRLSPLRRGLAIDSNVDYFTFYIPYRHVYGQ TWIDFMKDGVNATPLPTVTTGIDMDQTAYLGTVNPTSGIMPKFLHQSYLNIYNNYFKAPWMPDRTEANPSNLNDADSRYG FRCCHLKTIWSAPLPPQTEIAREMTTGSTTIDIMGLQSAYAKLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLLMR SNFWASGYDVDGTDQTSLGQFSGRVQQTFKHAVPRFFVPEHGVIMTLALVRFPPTCTEEHHYLIGKGSLTYTDLAGDPTL VGNLPPREIAMENLFRSGGTGTDQKFKVAESIWYRYHPSYVDSAYHLLEGFPFLQGRPAGNMTERVLIDHTKYDSCFQST QLGQWNAQAKFNVSVYRSIPTVRDSIMTS spike protein G Salmonella phage PJNS002 0.018864548999999998 60 LEVO MFQEFVSKHNSPFTSLPMVSKSVTPSVTAAPILSTPRNQQVTESFLDLTIATAAGGIASIISVDPSAKADNQVFSVCAHL TGAADLKYWAALVRFESATVPTTVTPTFDLFPIAGTYSNGTYIVKDCATIKTFPNVAGNTVYVGLMLFSNSWVAGKLTGI ISINQVRTEITTLQPLK DNA-binding protein J Salmonella phage PJNS002 0.002929386 60 LEVO MAKSYRRGSSGKKKGSRLWYVGGSQF DNA (5'-D(P*AP*AP*AP*AP*A)-3') Salmonella phage PJNS002 0.001521077 60 (DA)(DA)(DA)(DA)(DA) DNA DNA (5'-D(P*AP*AP*AP*A)-3') Salmonella phage PJNS002 0.0012078699999999998 60 (DA)(DA)(DA)(DA) DNA singleParticle particle 7.5 137.0 NaCl sodium chloride 2.65 KCl potassium chloride 10.0 Na2HPO4 dibasic sodium phosphate 1.75 KH2PO4 potassium dihydrogen phosphate
pH 7.2~7.6
 Quantifoil R1.2/1.3 COPPER 300 CARBON HOLEY GLOW DISCHARGE OTHER ETHANE 100 277 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 0.8 0.4 2.0 3.0 22500.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K3 (6k x 4k) 5760 4092 3827 1.25 50.0 1 528658 cryoSPARC 4.0.1 PHASE FLIPPING AND AMPLITUDE CORRECTION 1 I FOURIER SPACE 2.59 FSC 0.143 CUT-OFF cryoSPARC 4.0.1 86486 MAXIMUM LIKELIHOOD cryoSPARC 4.0.1 MAXIMUM LIKELIHOOD cryoSPARC 4.0.1 cryoSPARC 4.0.1 emd_62023.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 423.99997 423.99997 423.99997 90.0 90.0 90.0 X Y Z -2.4476821 4.0398765 0.03618706 0.25521976 1.06 1.06 1.06 0.65 AUTHOR AlphaFold in silico model RIGID BODY FIT REAL 18.149999999999999 emd_62023_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 423.99997 423.99997 423.99997 90.0 90.0 90.0 X Y Z -0.2725129 1.06685 0.013435727 0.12643732 1.06 1.06 1.06 AUTHOR emd_62023_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 423.99997 423.99997 423.99997 90.0 90.0 90.0 X Y Z -0.2736491 1.0452584 0.013419506 0.12650059 1.06 1.06 1.06 AUTHOR