REL RCSB RCSB RCSB 2014-11-17 2015-03-18 2015-05-06 2015-06-03 Cryo-EM reconstruction of quasi-HPV16 complexed with H263.A2 Fab Guan J Bywaters SM Brendle SA Lee H Ashley R Conway JF Makhov AM Christensen ND Hafenstein S quasi-HPV16, L1 capsomer, H263.A2 Fab Guan J Bywaters SM Brendle SA Lee H Ashley RE Makhov AM Conway JF Christensen ND Hafenstein S Structural comparison of four different antibodies interacting with human papillomavirus 16 and mechanisms of neutralization. VIROLOGY 483 253 263 2015 25996608 doi:10.1016/j.virol.2015.04.016 3j8w FULLOVERLAP quasi-HPV16 complexed with H263.A2 Fabs quasi-HPV16 complexed with H263.A2 Fabs 2 44.7 Human papillomavirus 16
isolated by gradient centrifugation
Human papillomavirus 16 Homo sapiens VERTEBRATES L1 L2 600 7 VIRION OTHER false false H263.A2 Fab Mus musculus hybridoma false singleParticle particle 1.2 7.4
1 M NaCl, 200 nM Tris
glow-discharged holey carbon supported grid
 ETHANE 90 102 GATAN CRYOPLUNGE 3 JEOL 2100 SPOT SCAN BRIGHT FIELD LAB6 200 2 1.49 5.52 40000.0 GATAN LIQUID NITROGEN 95 2014-07-31 GATAN ULTRASCAN 4000 (4k x 4k) 264 15
The particles were selected using semi-automatic program e2boxer.py (EMAN2).
Each particle
 OTHER 13.0 OTHER auto3dem
Semi-automatic particle selection was performed using e2boxer.py to obtain the particle coordinates, followed by particle boxing, linearization, normalization, and apodization of the images using Robem. Defocus and astigmatism values used to perform contrast transfer function (CTF) correction were assessed using Robem for the extracted particles. The icosahedrally averaged reconstruction was initiated using a random model generated with setup_rmc and reached 14 A resolution estimated at a Fourier Shell Correlation (FSC) of 0.5. For the last step of refinement, the final maps were CTF-corrected using a B factor of 200 A2.
8908 emd_6184.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 403 403 403 -201 -201 -201 403 403 403 1152.58 1152.58 1152.58 90.0 90.0 90.0 X Y Z -9.355942730000001 8.338958740000001 0.0 1.0 2.86 2.86 2.86 1.0 AUTHOR Reconstruction of quasi-HPV16 complexed with H263.A2 Fabs
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 3OAE A B C D E RIGID BODY FIT Chimera, Situs REAL
emd_6184.jpg