2025-02-26 REL PDBc INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY DATABASE_REFERENCES citation citation_author em_admin _citation.country _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _em_admin.last_update EXPERIMENTAL_SUMMARY citation citation_author em_admin _citation.country _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _em_admin.last_update PDBj PDBc 2024-09-30 2025-01-22 2025-01-22 2025-02-26 National Natural Science Foundation of China (NSFC) China Cryo-EM structure of neutralizing antibody 8G3 in complex with BA.1 RBD Li J Li H SARS-CoV-2, neutralizing antibody, RBD, VIRAL PROTEIN Liao Y Ma H Wang Z Wang S He Y Chang Y Zong H Tang H Wang L Ke Y Cai H Li P Tang J Chen H Drelich A Peng BH Hsu J Tat V Tseng CK Song J Yuan Y Wu M Liu J Yue Y Zhang X Wang Z Yang L Li J Ni X Li H Xiang Y Bian Y Zhang B Yin H Dimitrov DS Gilly J Han L Jiang H Xie Y Zhu J Rapid restoration of potent neutralization activity against the latest Omicron variant JN.1 via AI rational design and antibody engineering. Proc.Natl.Acad.Sci.USA US 122 e2406659122 e2406659122 2025 39908098 doi:10.1073/pnas.2406659122 1091-6490 0040 PNASA6 9js4 FULLOVERLAP Cryo-EM structure of neutralizing antibody 8G3 in complex with BA.1 RBD Cryo-EM structure of neutralizing antibody 8G3 in complex with BA.1 RBD 0 1 2 3 Severe acute respiratory syndrome coronavirus 2 Light chain of 8G3 Homo sapiens 0.023723163999999998 1 Cricetulus griseus LEVO DIQLTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSASGSGTDFTFTISSLQP EDIATYYCQHYDDLPNLPPTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSG NSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC Heavy chain of 8G3 Homo heidelbergensis 0.023338206999999996 1 Cricetulus griseus LEVO QVQLVESGGGLVQPGGSLRLSCAASGLTVSSNYMNWVRQAPGKGLEWVSVIYPGGTTYYADSVKGRFTISRHNSKNTLYL EMNSLRPEDTAVYYCARPIYGGNAGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC Spike glycoprotein Severe acute respiratory syndrome coronavirus BA.1, Omicron 0.137337391 1 Cricetulus griseus LEVO VNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHVIHVSGTNGTKRFDNPVLPFNDGVYFASI EKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYDHKNNKSWMESEFRVYSSANNCTFEYVSQPF LMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIIVREPEDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGD SSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNIT NLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG QTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLR SYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLKGTGVLTESNKKFLPFQQFGRDIADTT DAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGA EYVNNSYECDIPIGAGICASYQTQTKSHGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTK TSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKYFGGFNFSQILPDPSKPS KRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFKGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPA LQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNHNAQALNTLVKQLSSKFGAI SSVLNDIFSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFP QSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIV NNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQGYIPE APRDGQAYVRKDGEWVLLSTFLAHHHHHHHHHH P0DTC2 singleParticle particle 5.5 ETHANE TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.0 2.0 FEI FALCON IV (4k x 4k) 50.0 1 3.8 FSC 0.143 CUT-OFF 118107 PROJECTION MATCHING PROJECTION MATCHING emd_61766.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 440.0 440.0 440.0 90.0 90.0 90.0 X Y Z -1.5962365 2.4498417 -0.0021914984 0.03618098 1.1 1.1 1.1 0.6 AUTHOR emd_61766_msk_1.map emd_61766_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 440.0 440.0 440.0 90.0 90.0 90.0 X Y Z -2.1128204 3.5197392 0.0005888332 0.07012205 1.1 1.1 1.1 AUTHOR emd_61766_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 440.0 440.0 440.0 90.0 90.0 90.0 X Y Z -3.6624198 3.8214946 0.00061109685 0.06825271 1.1 1.1 1.1 AUTHOR