2026-08-12 REL PDBc INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY chem_comp chem_comp_atom chem_comp_bond em_admin entity pdbx_modification_feature pdbx_nonpoly_atom_coordination pdbx_nonpoly_atom_coordination_sphere pdbx_nonpoly_atom_coordination_sphere_order pdbx_struct_conn_angle pdbx_validate_chiral pdbx_validate_close_contact struct_conn _chem_comp.formula _chem_comp.formula_weight _em_admin.last_update _entity.formula_weight STRUCTURE_SUMMARY em_admin entity _em_admin.last_update _entity.formula_weight PDBj PDBc 2024-09-25 2025-10-22 2025-10-22 2026-08-12 Ministry of Science and Technology (MoST, China) China Cryo-EM structure of a tri-heme cytochrome-associated RC-LH1 complex from a marinephotoheterotrophic bacterium, purified with EDTA-containing solutions Chen JH Zheng Q Zhang X Wang W Liu Y Gu J photosynthesis, reaction center, bacteria Chen JH Zheng Q Zhang X Wang W Liu Y Gu J Cryo-EM structure of a tri-heme cytochrome-associated RC-LH1 complex from a marine photoheterotrophic bacterium, purified with EDTA-containing solutions To Be Published 0353 9jpb FULLOVERLAP EMDB EMD-61695 associated EM volume
Cryo-EM structure of a tri-heme cytochrome-associated RC-LH1 complex from a marine photoheterotrophic bacterium, purified with EDTA-containing solutions
 Tri-Heme Cytochrome-Associated RC-LH1 Complex Tri-Heme Cytochrome-Associated RC-LH1 Complex 0 1 2 3 4 5 6 7 Dinoroseobacter shibae DFL 12 = DSM 16493 0.423 Antenna pigment protein alpha chain Dinoroseobacter shibae DFL 12 = DSM 16493 0.006195408999999999 17 LEVO MSKFYKIWLIFDPRRVFVAQGVFLFLLAAMIHLVLLSTEHFNWFELAAANAAM A8LQ15 Reaction center protein O chain Dinoroseobacter shibae DFL 12 = DSM 16493 0.025206586 1 LEVO MATQRKDMTCTITCWGIGVLLGIMTTVGLMVVGWSFLQGAFMGVLAWLIVGGVLAVAVCGETGRPKDNAEQIRAEMAAAR ERVRGATPGITPKPAPSVPADVRSKVQPSAALAGEAELAGRKGSWSYDSGAGHASGAGHDAGTDAAKPATLTAARDGKAD DLKKIKGVGPKLEEMLHSMGFYHFDQVASWSEQELAWVDENLEGFKGRASRDEWVAQAKLLAQGGETEFSKRVDGGDVY A8LIU2 Antenna pigment protein beta chain Dinoroseobacter shibae DFL 12 = DSM 16493 0.005578334 17 LEVO MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF A8LQ14 Reaction center protein M chain Dinoroseobacter shibae DFL 12 = DSM 16493 0.037583723 1 LEVO MPEYQNIFTQVQVQGPAELGVDNENNLTEERTTGTGFSQLIGWIGNAQLGPIYLGWFGIISLVTGTLWFNIVGFNMLSQV GYSIPEFIRQLFWLALEPPSPEYGLRMPPLDDGGWFIIASFFLLVSVISWWLRSYQLAEMHKMGKHVAWAFAAAIWLFLV LGLFRPILMGSWSEAVPYGIFPHLDWTTAFSIRYGNLYYNPFHALSIVFLYGSVLLFAMHGATILAVTRFGGDRELEQIY DRGTASERAGLFWRWTMGFNATMEGIHRWAWWFAVLTPITGGIGILLTGTVVDNWFLWAVEHNFAPDYTQDYGYEAYTTY DGFLGREEGN A8LQ17 Reaction center protein L chain Dinoroseobacter shibae DFL 12 = DSM 16493 0.031197178 1 LEVO MALLSFERKYRVRGGTLIGGDLFDFWVGPFYVGFFGVTTAFFALLGTILIFWGASQQGTFNPWLINIAPPDLSYGLGMAP LMEGGLWQIITICAIGAFVSWALREVEICRKLGMGYHVPFAFSVAIFAYVTLVVFRPLLMGAWGHGFPYGIWSHLDWVSN TGYAYLHFHYNPAHMIAVTFFFTTTLALALHGALVLSAANPPKGEEVKGPDNEDTFFRDFIGYSIGTLGIHRVGLLLALN AGFWSAVCIIISGPVWTKGWPEWWNWWLEMPIWPSQVDC A8LQ16 Reaction center protein H chain Dinoroseobacter shibae DFL 12 = DSM 16493 0.028739449 1 LEVO MEETFFGNFDLASLSLWLFYGFFALLIYYLQTENMREGYPLEDDDGNTAANQGPFPLPKEKTFKLQHGRGELTLPGEDVQ RRDNLALRKTAHGNGFPMEPTGDPMLDGVGPASWSKRRDVPELDAHGHPKIVPMSAAEGFGVSAGTDPRGLPVMAGDGEI VGLVSDMWIDEAEQLVRYLEIELDPEWGDGKRLVQREMVRIKSDRVKVRSIYGKHFKNVPKTKSPNQVTLLEEDKIMAYY AGGTLYADESRLEPQL A8LQ33 Photosynthetic reaction center cytochrome c subunit Dinoroseobacter shibae DFL 12 = DSM 16493 0.039977367 1 LEVO MLPKWFDEWNSKNPTDIYKPAIVVGVAGGAVFAAALLVSWGQPLATDSMQTGPRGTGMSVPEFVSDLDTPDPTIEVFLAS TSDPVIPEEGAQTAGEAYENVDPVLADLTVENYDRLLAAMRSWTGIPDLLEDPDHYQSKVAINMIQMNQTINEEWAGHVY ANAEVGVTCFTCHRGQAVPSEVWYRIDPVTENTSGWASVQNRATSLSQFTSLPSDALYQYLLNYEQIAVHDLESRVETLP GDPTWQNTERTYSLMNYFSNSLGRNCVFCHNSRAFYDPAQHTPQWATAMLGISMVQELNNEWIVPIGEAHLPPERLGPVY NDVPKLACKTCHKGYQQPLQGLNVVADWPELATTEGPFYD A8LQ18 BACTERIOCHLOROPHYLL A 0.0009115039999999999 38 BCL SPEROIDENONE 0.000594993 35 SPN (21R,24R,27S)-24,27,28-trihydroxy-18,24-dioxo-19,23,25-trioxa-24lambda~5~-phosphaoctacosan-21-yl (9Z)-octadec-9-enoate 0.0007770599999999999 12 MW9 DODECYL-BETA-D-MALTOSIDE 0.000510615 5 LMT FE (III) ION 5.5845e-05 1 FE BACTERIOPHEOPHYTIN A 0.000889215 2 BPH UBIQUINONE-10 0.0008633429999999999 2 U10 CARDIOLIPIN 0.0014640429999999997 2 CDL HEME C 0.0006205189999999999 3 HEC singleParticle particle 8.0 Quantifoil R1.2/1.3 GOLD 300 GLOW DISCHARGE ETHANE 100 279 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.5 2.5 FEI FALCON IV (4k x 4k) 50.0 1 cryoSPARC 4.2.1 PHASE FLIPPING AND AMPLITUDE CORRECTION 2.8 FSC 0.143 CUT-OFF cryoSPARC 4.5.1 230375 MAXIMUM LIKELIHOOD cryoSPARC 4.2.1 MAXIMUM LIKELIHOOD 10 cryoSPARC 4.5.1 emd_61695.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 307.2 307.2 307.2 90.0 90.0 90.0 X Y Z -0.70460874 1.2804003 0.00081318716 0.041651674 1.2 1.2 1.2 0.103 AUTHOR Cryo-EM structure of a tri-heme cytochrome-associated RC-LH1 complex from a marine photoheterotrophic bacterium, purified with EDTA-containing solutions emd_61695_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 307.2 307.2 307.2 90.0 90.0 90.0 X Y Z -0.7350661 1.3787063 0.001360275 0.07687693 1.2 1.2 1.2 AUTHOR half map-A emd_61695_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 307.2 307.2 307.2 90.0 90.0 90.0 X Y Z -0.7624944 1.4162751 0.0013658704 0.076752774 1.2 1.2 1.2 AUTHOR half map-B