<emd emdb_id="EMD-6167" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2014-10-27</deposition>
            <header_release>2014-11-26</header_release>
            <map_release>2014-12-17</map_release>
            <update>2014-12-24</update>
        </key_dates>
        <title>Essential Structural and Functional Roles of the Cmr4 Subunit in RNA Cleavage by the Cmr CRISPR-Cas Complex</title>
        <authors_list>
            <author>Ramia NF</author>
            <author>Spilman M</author>
            <author>Tang L</author>
            <author>Shao Y</author>
            <author>Elmore J</author>
            <author>Hale C</author>
            <author>Cocozaki A</author>
            <author>Bhattacharya N</author>
            <author>Terns RM</author>
            <author>Terns MP</author>
            <author>Li H</author>
            <author>Stagg SM</author>
        </authors_list>
        <keywords>CRISPR, Cmr complex, RNA interference, Cmr proteins</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Ramia NF</author>
                    <author order="2">Spilman M</author>
                    <author order="3">Tang L</author>
                    <author order="4">Shao Y</author>
                    <author order="5">Elmore J</author>
                    <author order="6">Hale C</author>
                    <author order="7">Cocozaki A</author>
                    <author order="8">Bhattacharya N</author>
                    <author order="9">Terns RM</author>
                    <author order="10">Terns MP</author>
                    <author order="11">Li H</author>
                    <author order="12">Stagg SM</author>
                    <title>Essential Structural and Functional Roles of the Cmr4 Subunit in RNA Cleavage by the Cmr CRISPR-Cas Complex</title>
                    <journal>Cell Reports</journal>
                    <volume>9</volume>
                    <first_page>1610</first_page>
                    <last_page>1617</last_page>
                    <year>2014</year>
                    <external_references type="PUBMED">25482566</external_references>
                    <external_references type="DOI">doi:10.1016/j.celrep.2014.11.007</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
    </crossreferences>
    <sample>
        <name>Filament of Cmr4 and Cmr5</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>Filament of Cmr4 and Cmr5</name>
                <number_unique_components>2</number_unique_components>
            </sample_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>Cmr4</name>
                <natural_source database="NCBI">
                    <organism ncbi="2261">Pyrococcus furiosus</organism>
                </natural_source>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                </recombinant_expression>
                <sequence />
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name>Cmr5</name>
                <natural_source database="NCBI">
                    <organism ncbi="2261">Pyrococcus furiosus</organism>
                </natural_source>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                </recombinant_expression>
                <sequence />
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>helical</method>
            <aggregation_state>helicalArray</aggregation_state>
            <specimen_preparation_list>
                <helical_preparation preparation_id="1">
                    <buffer>
                        <ph>7.4</ph>
                        <details>20 mM Tris-HCl, pH 7.4, 500 mM NaCl, 5% v/v glycerol, 5 mM beta-mercaptoethanol</details>
                    </buffer>
                    <grid>
                        <details>400 mesh Quantifoil grid with 2-micron holes</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">100</chamber_humidity>
                        <instrument>FEI VITROBOT MARK IV</instrument>
                    </vitrification>
                    <details>Filaments were prepared for cryoEM by heating a sample of Cmr4-5 to 70 degrees C for 15 minutes and cooling to room temperature over 10 minutes.</details>
                </helical_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <helical_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">120</acceleration_voltage>
                    <nominal_cs units="mm">2.7</nominal_cs>
                    <nominal_defocus_min units="&#181;m">1.7</nominal_defocus_min>
                    <nominal_defocus_max units="&#181;m">3.3</nominal_defocus_max>
                    <nominal_magnification>59000.0</nominal_magnification>
                    <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
                    <alignment_procedure>
                        <legacy>
                            <astigmatism>Objective lens astigmatism was corrected at 150,000 times magnification.</astigmatism>
                            <electron_beam_tilt_params>0</electron_beam_tilt_params>
                        </legacy>
                    </alignment_procedure>
                    <date>2013-06-19</date>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="CCD">GATAN ULTRASCAN 4000 (4k x 4k)</film_or_detector_model>
                            <number_real_images>1866</number_real_images>
                            <average_electron_dose_per_image units="e/&#8491;^2">15</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </helical_microscopy>
            </microscopy_list>
            <helical_processing image_processing_id="1">
                <details>Featureless cylinder was refined by projection and cross correlation with EMAN1, correspondence analysis with Spider, and helical symmetry refinement with IHRSR.</details>
                <final_reconstruction>
                    <applied_symmetry>
                        <helical_parameters>
                            <delta_z units="&#8491;">24.7</delta_z>
                            <delta_phi units="deg">48.2</delta_phi>
                            <axial_symmetry>C1</axial_symmetry>
                        </helical_parameters>
                    </applied_symmetry>
                    <algorithm>OTHER</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">13.0</resolution>
                    <resolution_method>OTHER</resolution_method>
                    <software_list>
                        <software>
                            <name>EMAN1, Spider, IHRSR</name>
                        </software>
                    </software_list>
                </final_reconstruction>
                <ctf_correction>
                    <details>phase flip of each particle</details>
                </ctf_correction>
            </helical_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="3457">
        <file>emd_6167.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>96</col>
            <row>96</row>
            <sec>96</sec>
        </dimensions>
        <origin>
            <col>-48</col>
            <row>-48</row>
            <sec>-48</sec>
        </origin>
        <spacing>
            <x>96</x>
            <y>96</y>
            <z>96</z>
        </spacing>
        <cell>
            <a units="&#8491;">266.88</a>
            <b units="&#8491;">266.88</b>
            <c units="&#8491;">266.88</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-5.21389723</minimum>
            <maximum>7.38952255</maximum>
            <average>0.03401719</average>
            <std>1.03925931</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">2.78</x>
            <y units="&#8491;">2.78</y>
            <z units="&#8491;">2.78</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>3.3</level>
                <source>EMDB</source>
            </contour>
        </contour_list>
        <annotation_details>Helical reconstruction of Cmr4-5 filament</annotation_details>
        <details>::::EMDATABANK.org::::EMD-6167::::</details>
    </map>
    <validation>
        <fsc_curve>
            <file>emd_6167_fsc.xml</file>
        </fsc_curve>
    </validation>
</emd>