<emd emdb_id="EMD-6124" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2014-10-08</deposition>
            <header_release>2014-10-29</header_release>
            <map_release>2014-12-10</map_release>
            <update>2015-03-11</update>
        </key_dates>
        <title>Structure of the F-actin-tropomyosin complex</title>
        <authors_list>
            <author>von der Ecken J</author>
            <author>Mueller M</author>
            <author>Lehman W</author>
            <author>Manstein DJ</author>
            <author>Penczek PA</author>
            <author>Raunser S</author>
        </authors_list>
        <keywords>F-actin, tropomyosin, filament, protein polymers, muscle, thin filament, cytoskeleton</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">von der Ecken J</author>
                    <author order="2">Mueller M</author>
                    <author order="3">Lehman W</author>
                    <author order="4">Manstein DJ</author>
                    <author order="5">Penczek PA</author>
                    <author order="6">Raunser S</author>
                    <title>Structure of the F-actin--tropomyosin complex</title>
                    <journal>NATURE</journal>
                    <volume>519</volume>
                    <first_page>114</first_page>
                    <last_page>117</last_page>
                    <year>2015</year>
                    <external_references type="PUBMED">25470062</external_references>
                    <external_references type="DOI">doi:10.1038/nature14033</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>3j8a</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
    </crossreferences>
    <sample>
        <name>F-actin-tropomyosin complex</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>F-actin-tropomyosin complex</name>
                <oligomeric_state>filament</oligomeric_state>
                <number_unique_components>2</number_unique_components>
            </sample_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>F-actin (alpha)</name>
                <natural_source database="NCBI">
                    <organism ncbi="9986">Oryctolagus cuniculus</organism>
                    <synonym_organism>rabbit</synonym_organism>
                    <tissue>muscle</tissue>
                </natural_source>
                <number_of_copies>5</number_of_copies>
                <oligomeric_state>filament</oligomeric_state>
                <recombinant_exp_flag>false</recombinant_exp_flag>
                <recombinant_expression database="NCBI" />
                <sequence>
                    <external_references type="UNIPROTKB">P68135</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name>tropomyosin (alpha)</name>
                <natural_source database="NCBI">
                    <organism ncbi="10090">Mus musculus</organism>
                    <synonym_organism>mouse</synonym_organism>
                    <tissue>muscle</tissue>
                </natural_source>
                <oligomeric_state>filament (dimer)</oligomeric_state>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                </recombinant_expression>
                <sequence>
                    <external_references type="UNIPROTKB">P58771</external_references>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>helical</method>
            <aggregation_state>filament</aggregation_state>
            <specimen_preparation_list>
                <helical_preparation preparation_id="1">
                    <buffer>
                        <ph>7.5</ph>
                        <details>5 mM Tris, 1 mM DTT, 100 mM KCL, 2 mM MgCl2</details>
                    </buffer>
                    <grid>
                        <details>C-flats 2/1 copper 300 mesh, Protochips, glow-discharged</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">90</chamber_humidity>
                        <chamber_temperature units="K">106</chamber_temperature>
                        <instrument>GATAN CRYOPLUNGE 3</instrument>
                        <method>Sample was applied to grid, incubated for 10 seconds, and manually blotted for 3 seconds from the backside with filter paper.</method>
                    </vitrification>
                </helical_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <helical_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_cs units="mm">0</nominal_cs>
                    <nominal_defocus_min units="&#181;m">0.8</nominal_defocus_min>
                    <nominal_defocus_max units="&#181;m">2.6</nominal_defocus_max>
                    <nominal_magnification>59000.0</nominal_magnification>
                    <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
                    <details>Cs-corrected microscope</details>
                    <date>2013-10-17</date>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="CCD">FEI FALCON II (4k x 4k)</film_or_detector_model>
                            <number_real_images>1311</number_real_images>
                            <average_electron_dose_per_image units="e/&#8491;^2">14.6</average_electron_dose_per_image>
                            <details>Every image is the average of seven frames recorded by the direct electron detector after beam-induced motion correction. Only 689 images were used for the refinement.</details>
                        </image_recording>
                    </image_recording_list>
                </helical_microscopy>
            </microscopy_list>
            <helical_processing image_processing_id="1">
                <final_reconstruction>
                    <applied_symmetry>
                        <helical_parameters>
                            <delta_z units="&#8491;">27.5</delta_z>
                            <delta_phi units="deg">166.4</delta_phi>
                            <axial_symmetry>C1</axial_symmetry>
                        </helical_parameters>
                    </applied_symmetry>
                    <algorithm>OTHER</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">3.7</resolution>
                    <resolution_method>OTHER</resolution_method>
                    <software_list>
                        <software>
                            <name>SPARX</name>
                        </software>
                    </software_list>
                    <details>The tropomyosin map filtered to 6.5 Angstrom was merged with the final F-actin map (3.7 Angstrom) to obtain a map of the entire F-actin tropomyosin
complex.</details>
                </final_reconstruction>
                <ctf_correction>
                    <details>each micrograph</details>
                </ctf_correction>
            </helical_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="6738">
        <file>emd_6124.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>103</col>
            <row>92</row>
            <sec>182</sec>
        </dimensions>
        <origin>
            <col>-51</col>
            <row>-44</row>
            <sec>-89</sec>
        </origin>
        <spacing>
            <x>92</x>
            <y>103</y>
            <z>182</z>
        </spacing>
        <cell>
            <a units="&#8491;">115.36</a>
            <b units="&#8491;">103.04</b>
            <c units="&#8491;">203.84</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-8.4796648</minimum>
            <maximum>16.16378212</maximum>
            <average>0.03826505</average>
            <std>1.49326706</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">1.12</x>
            <y units="&#8491;">1.12</y>
            <z units="&#8491;">1.12</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>3.7</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <annotation_details>Reconstruction of F-actin tropomyosin complex</annotation_details>
        <details>::::EMDATABANK.org::::EMD-6124::::</details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <initial_model>
                    <access_code>4A7N</access_code>
                    <chain>
                        <chain_id>A</chain_id>
                    </chain>
                    <chain>
                        <chain_id>B</chain_id>
                    </chain>
                    <chain>
                        <chain_id>C</chain_id>
                    </chain>
                    <chain>
                        <chain_id>D</chain_id>
                    </chain>
                    <chain>
                        <chain_id>E</chain_id>
                    </chain>
                </initial_model>
                <refinement_protocol>FLEXIBLE FIT</refinement_protocol>
                <software_list>
                    <software>
                        <name>SPARX, PHENIX, COOT</name>
                    </software>
                </software_list>
                <target_criteria>R-factor</target_criteria>
                <refinement_space>RECIPROCAL</refinement_space>
                <overall_bvalue>55.399999999999999</overall_bvalue>
            </modelling>
        </modelling_list>
        <figure_list>
            <figure>
                <file>emd_6124.jpg</file>
            </figure>
        </figure_list>
    </interpretation>
</emd>