REL RCSB RCSB RCSB 2014-10-02 2014-11-05 2015-05-06 2015-06-03 Cryo-EM reconstruction of quasi-HPV16 complexed with H16.14J Fab Guan J Bywaters SM Brendle SA Lee H Ashley RE Conway JF Makhov AM Christensen ND Hafenstein S quasi-HPV16, L1 capsomer, H16.14J Fab Guan J Bywaters SM Brendle SA Lee H Ashley RE Makhov AM Conway JF Christensen ND Hafenstein S Structural comparison of four different antibodies interacting with human papillomavirus 16 and mechanisms of neutralization. VIROLOGY 483 253 263 2015 25996608 doi:10.1016/j.virol.2015.04.016 3j8v FULLOVERLAP Quasi-human papillomavirus 16 complexed with H16.14J Fab Quasi-human papillomavirus 16 complexed with H16.14J Fab 300 H16.14J Fabs bind to one HPV16 capsid 2 44.7 Human papillomavirus 16 Human papillomavirus 16 Homo sapiens VERTEBRATES Homo sapiens 293TT SV40 27.7 L1 L2 600 7 VIRION OTHER false false H16.14J Fab Mus musculus mouse false singleParticle particle 1.0 7.4
1 M NaCl, 200 mM Tris
glow-discharged holey carbon support grid
 ETHANE 90 102 GATAN CRYOPLUNGE 3 Blot for 0.7 seconds before plunging. JEOL 2100 SPOT SCAN BRIGHT FIELD LAB6 200 2 0.62 4.69 50000.0 GATAN LIQUID NITROGEN 95 2014-08-27 GATAN ULTRASCAN 4000 (4k x 4k) 385 15
The particles were selected using semi-automatic program e2boxer.py (EMAN2).
Each particle
 OTHER 13.9 OTHER Auto3dem
Semi-automatic particle selection was performed using e2boxer.py to obtain the particle coordinates, followed by particle boxing, linearization, normalization, and apodization of the images using Robem. Defocus and astigmatism values necessary to perform contrast transfer function (CTF) correction for the extracted particles were assessed using Robem. The icosahedrally averaged reconstruction was initiated using a random model generated with setup_rmc. For the last step of refinement, the final maps were CTF-corrected using a B factor of 200 A2.
5642 emd_6121.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 467 467 467 -233 -233 -233 467 467 467 1088.11 1088.11 1088.11 90.0 90.0 90.0 X Y Z -8.250259399999999 8.402011870000001 0.0 1.0 2.33 2.33 2.33 1.0 AUTHOR Reconstruction of quasi-HPV16 complexed with H16.14J Fab
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 3OAE A B C D E RIGID BODY FIT Chimera, Situs REAL
emd_6121.tif