2026-08-12 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name STRUCTURE_SUMMARY em_admin entity _em_admin.last_update _entity.formula_weight REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY chem_comp chem_comp_atom chem_comp_bond em_admin entity pdbx_modification_feature pdbx_nonpoly_atom_coordination pdbx_nonpoly_atom_coordination_sphere pdbx_nonpoly_atom_coordination_sphere_order pdbx_struct_conn_angle pdbx_validate_chiral struct_conn _chem_comp.formula _chem_comp.formula_weight _em_admin.last_update _entity.formula_weight PDBj PDBj 2024-08-06 2024-12-18 2024-12-18 2026-08-12 Japan Agency for Medical Research and Development (AMED) JP21am0101118 Japan Japan Agency for Medical Research and Development (AMED) JP21am0101116 Japan Japan Society for the Promotion of Science (JSPS) JP16H04174 Japan Japan Society for the Promotion of Science (JSPS) JP18H05153 Japan Japan Society for the Promotion of Science (JSPS) 20H05086 Japan Japan Society for the Promotion of Science (JSPS) 20H02856 Japan Kimura Y Kanno R Mori K Matsuda Y Seto R Takenaka S Mino H Ohkubo T Honda M Sasaki YC Kishikawa J Mitsuoka K Mio K Hall M Purba ER Mochizuki T Mizoguchi A Humbel BM Madigan MT Wang-Otomo Z-Y Tani K LH1-RC COMPLEX, PHOTOSYNTHESIS, PURPLE BACTERIA Kimura Y Kanno R Mori K Matsuda Y Seto R Takenaka S Mino H Ohkubo T Honda M Sasaki YC Kishikawa JI Mitsuoka K Mio K Hall M Purba ER Mochizuki T Mizoguchi A Humbel BM Madigan MT Wang-Otomo ZY Tani K Biochemistry US 64 170 179 2025 39680849 doi:10.1021/acs.biochem.4c00506 0006-2960 0033 BICHAW 9j2f FULLOVERLAP EMDB EMD-61095 associated EM volume

Structure of photosynthetic LH1-RC complex from the purple bacterium Blastochloris tepida

Photosynthetic LH1-RC complex of Blastochloris tepida Photosynthetic LH1-RC complex of Blastochloris tepida 0 1 2 3 4 5 7 8 6 Blastochloris tepida Photosynthetic reaction center cytochrome c subunit Blastochloris tepida 0.039181129 1 LEVO MKHMIAKSVATVALASLVSGCFEPPPAISTQTGFRGLSMGEVLHPATVAAKKERDAQYPPALPAVKAEGQPVSKVYKNVK VLGDLTEPEFLRTMTAMTEWVSPKEGCTYCHDEADLSSEAKYPFKVARRMLEMTRHINTDWTSHVAQTGVTCYTCHRGRP VPPYIRYLEPRLPLDNAIKPTFVEADNSGHVVRLAKNTAYSALNYDPFAMFLANDKREIRFVPQTALPPVGVSRGMERRP LSDAYATFALMMFISDAIGTNCTFCHNPQTFESWGNKSTPQRAIAWQGIKMTRDLNMNFLSPLKPVYPANRLGAQGEAPM ADCRTCHQGVTKPLFGASRMKDYPELGPVKAAAK A0A348FW74 Reaction center protein L chain Blastochloris tepida 0.030406063999999997 1 LEVO MALLSFERKYRVRGGTLIGGDLFDFWVGPFYVGFFGVSAIFFIFLGVSLIGYAASQGPSLDPFAISINPPDLKYGFAGAP LLEGGFWQAITVCAIGAFISWQLREVEISRKLGMGWHVPIAFGVPIFMFLVLQVFRPILMGGWGFAFPYGILSHLDWVNN FGFQYLNWHYNPGHMSSVSFLFANAMALGLHGGLILSVANPGDGDKVKTAEHENAYFRDVVGYSIGALAIHRLGLFLASN IFLTGAFGTIASGPFWTRGWPEWWGWWLDIPFWS A0A348FW72 Reaction center protein M chain Blastochloris tepida 0.037068769999999994 1 LEVO MADFQTIYTQIQARGPDHFGPSGQWGDIDRVGKPIFIKWLGRIGDAQIGPVYLGASGVGGIAFGLTAILIIGFNMLAQVS FDPLQFFRQFFWLGLYPPKAQYGMGIPPLNDGGWWLMAGLMMTLSLGCWWIRVYSRARALGLGTHIAWNFAMAIFFVLCI GFFHPVLVGSWSEAVPFGIFPHLDWLTAFSMRYGNFYYCPWHGFSIGFAYGCGLLFAAHGATILAVARFGGDREIEQITD RGTAVERAALFWRWTMGFNATIESIHRWGWFFSFMVMFSASVGILLTGTFVDNWYLWCVKHGAAPDYPAFLPATPDPRAG TFDPRTLTGVPQ A0A348FW73 Photosynthetic reaction center subunit H Blastochloris tepida 0.028839578 1 LEVO (FME)YYGALANHLDIAQLAWYGHWLVIWTVVLFYLRREDRREGYPLVEPLGLVKLPSPDVQSGELPYPKTFTLYHGGTV QAPNPNRRYETRELKLAQTDGFEGAPLAPTGNPMVDGVGPASWAERSEVVDSTFEGKAKIVPLRAAPEFYIAEGDLDPRG LPVFGADGIEAGTVTDLWVDRSEYYFRYLEISVAGSARTALMPLGFASITKDGVKVQAILASQFANVPRLQSRDQITLRE EDKVSAYYAGGLLYATPERAEPLL A0A348FW44 Antenna complex alpha/beta subunit domain-containing protein Blastochloris tepida 0.00783426 17 LEVO MANENPRSASWKLWLILDPRRVLTALFIYLTVIALLIHFGLLSTNRLNWWEFQRGLPAASLVVVPPAVG A0A348FW71 Antenna complex alpha/beta subunit domain-containing protein Blastochloris tepida 0.007653907 17 LEVO MADLKPSLTGLTEEEAKEFHSVFVSSMVLYLATAVIVHYLVWTARPWIAPIPKGWVNLDGVTTALSYLV A0A348FW70 Light-harvesting protein gamma1 Blastochloris tepida 0.005927073 1 LEVO MKLSFVIGALSAILASTAASAAMVNGVVQPSITDWNLWVPLGILGIPTIWIALLYR A0A348G0X9 Light-harvesting protein B-1015 gamma chain Blastochloris tepida 0.00593301 15 LEVO MKLSAVIGALSVVLTSTLASAYFAADGSVVPSITDANLWVPLGILGIPTIWIALLYR A0A348G0Y0 HEME C 0.0006205189999999999 4 HEC MAGNESIUM ION 2.4305e-05 1 MG Ubiquinone-8 0.000727109 5 UQ8 DIACYL GLYCEROL 0.000625018 1 DGA BACTERIOCHLOROPHYLL B 0.000909488 38 BCB BACTERIOPHEOPHYTIN B 0.0008871989999999999 2 BPB CARDIOLIPIN 0.0014640429999999997 5 CDL FE (III) ION 5.5845e-05 1 FE MENAQUINONE-7 0.000648999 1 MQ7 15-cis-1,2-dihydroneurosporene 0.0005409039999999999 1 NS5 DODECYL-BETA-D-MALTOSIDE 0.000510615 8 LMT (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE 0.0007490069999999999 6 PGV all-trans-1,2-dihydroneurosporene 0.0005409039999999999 16 NS0 water 1.8015e-05 423 HOH singleParticle particle 3.8 8.5 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.9 2.7 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON III (4k x 4k) COUNTING 40.0 1 373104 PHASE FLIPPING ONLY C1 FOURIER SPACE 2.2 FSC 0.143 CUT-OFF 294012 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD RIGID BODY FIT REAL emd_61095_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 328.0 328.0 328.0 90.0 90.0 90.0 X Y Z -0.04010413 0.14578645 0.000042976175 0.004133873 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-61095:::: half odd map emd_61095_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 328.0 328.0 328.0 90.0 90.0 90.0 X Y Z -0.035956223 0.14630654 0.00004467204 0.004125981 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-61095:::: half even map