2025-05-21 REL PDBj PDBj PDBj 2024-05-27 2024-11-06 2024-11-06 2025-05-21 Japan Agency for Medical Research and Development (AMED) JP21ym0126048 Japan SARS-CoV-2 XBB.1.5 spike glycoprotein trimer in complex with antigen-binding fragments (Fabs) Sugita Y Kimura K Noda T Hashiguchi T Complex, VIRAL PROTEIN Kuwata T Kaku Y Biswas S Matsumoto K Shimizu M Kawanami Y Uraki R Okazaki K Minami R Nagasaki Y Nagashima M Yoshida I Sadamasu K Yoshimura K Ito M Kiso M Yamayoshi S Imai M Ikeda T Sato K Toyoda M Ueno T Inoue T Tanaka Y Kimura KT Hashiguchi T Sugita Y Noda T Morioka H Kawaoka Y Matsushita S Induction of IGHV3-53 public antibodies with broadly neutralising activity against SARS-CoV-2 including Omicron subvariants in a Delta breakthrough infection case. Ebiomedicine NE 110 105439 105439 2024 39488016 doi:10.1016/j.ebiom.2024.105439 2352-3964 SARS-CoV-2 XBB.1.5 spike glyco protein-human Fab complex SARS-CoV-2 XBB.1.5 spike glyco protein-human Fab complex 0 SARS-CoV-2 XBB.1.5 Antigen-binding fragments (Fab) 1 Homo sapiens SARS-CoV-2 XBB.1.5 spike glyco protein 1 SARS-CoV-2 XBB.1.5 singleParticle particle 7.4 Quantifoil R0.6/1 GOLD 300 GLOW DISCHARGE AIR 0.02
10 mA
 ETHANE 100 298 FEI VITROBOT MARK IV TFS GLACIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 50.0 2.7 0.6 1.6 150000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON IV (4k x 4k) 1 5469 52.0 1 1222638 cryoSPARC 4.1.1 PHASE FLIPPING ONLY C3 3.76 FSC 0.143 CUT-OFF cryoSPARC 4.1.1 60704 MAXIMUM LIKELIHOOD cryoSPARC 4.1.1 MAXIMUM LIKELIHOOD cryoSPARC 4.1.1 1 cryoSPARC 4.1.1 emd_60274.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 342 342 342 0 0 0 342 342 342 316.35 316.35 316.35 90.0 90.0 90.0 X Y Z -0.43544054 0.79701513 -0.00040951677 0.022052795 0.925 0.925 0.925 0.1 AUTHOR b-factor sharpened map emd_60274_msk_1.map emd_60274_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 306 306 306 0 0 0 306 306 306 283.05002 283.05002 283.05002 90.0 90.0 90.0 X Y Z -0.28802672 0.59148633 -0.00024900012 0.014271886 0.9250001 0.9250001 0.9250001 AUTHOR a locally refined map emd_60274_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 342 342 342 0 0 0 342 342 342 316.35 316.35 316.35 90.0 90.0 90.0 X Y Z -0.30174187 0.5174758 -0.00015473718 0.029277664 0.925 0.925 0.925 AUTHOR a half map emd_60274_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 342 342 342 0 0 0 342 342 342 316.35 316.35 316.35 90.0 90.0 90.0 X Y Z -0.2825635 0.5089839 -0.00016482659 0.029418182 0.925 0.925 0.925 AUTHOR a half map