REL RCSB RCSB RCSB 2014-01-06 2014-02-12 2014-03-19 2014-05-07 Negative stain reconstruction of HIV envelope glycoprotein BG505 SOSIP.664 in complex with CAP256-VRC26.09 Fab Ward AB Kim HJ HIV, envelope glycoprotein trimer, CAP256, VRC.26, V1/V2 directed antibody Doria-Rose NA Schramm CA Gorman J Moore PL Bhiman JN Dekosky BJ Ernandes MJ Georgiev IS Kim HJ Pancera M Staupe RP Altae-Tran HR Bailer RT Crooks ET Cupo A Druz A Garrett NJ Hoi KH Kong R Louder MK Longo NS McKee K Nonyane M O'Dell S Roark RS Rudicell RS Schmidt SD Sheward DJ Soto C Wibmer CK Yang Y Zhang Z Comparative Sequencing NISC Mullikin JC Binley JM Sanders RW Wilson IA Moore JP Ward AB Georgiou G Williamson C Abdool Karim SS Morris L Kwong PD Shapiro L Mascola JR Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies. NATURE 509 55 62 2014 24590074 doi:10.1038/nature13036 HIV-1 BG505 SOSIP.664 in complex with CAP256-VRC26.09 Fab HIV-1 BG505 SOSIP.664 in complex with CAP256-VRC26.09 Fab
Sample was monodisperse
One HIV trimer binds one Fab 2 0.41 envelope glycoprotein BG505 SOSIP.664 Human immunodeficiency virus 1 HIV-1 Membrane 0.36 1 Trimer true Homo sapiens HEK 293S pPI4 CAP256-VRC26.09 Fab Homo sapiens Human B cells 0.05 1 heterodimer true Homo sapiens HEK 293F IgG1, kappa, lambda singleParticle particle 0.08 7.4
50 mM Tris, 150 mM NaCl
 NEGATIVE
Grids were adsorbed with protein, blotted, and stained with 2% uranyl formate for 20 seconds.
400 Cu mesh grid with thin carbon support, glow discharged in natural atmosphere
 NONE OTHER FEI TECNAI 12 FLOOD BEAM BRIGHT FIELD LAB6 120 1.0 1.0 52000.0 52000.0 SIDE ENTRY, EUCENTRIC 292 294 293 Objective lens astigmatism was corrected at 100,000 times magnification FEI 2013-10-18 TVIPS TEMCAM-F416 (4k x 4k) 174 25 0 50
The particles were picked using the automated DoG Picker and put into a stack using the Appion software package. Initial reference free 2D class averages were calculated using particles binned by 2 via Xmipp Clustering 2D Alignment and sorted into classes. A template stack of 44 class averages was used to generate an ab initio model, which was refined using EMAN.
OTHER 28.0 OTHER EMAN, EMAN2, Xmipp, IMAGIC
Map was calculated from a single dataset.
6763 64 emd_5856.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 160 160 160 -39 -39 -39 160 160 160 328.0 328.0 328.0 90.0 90.0 90.0 X Y Z -2.4231379 13.975288389999999 0.0 0.8505826 2.05 2.05 2.05 2.33 AUTHOR Negative stain reconstruction of HIV-1 BG505 SOSIP.664 in complex with CAP256-VRC26.09 Fab
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