<emd emdb_id="EMD-5839" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2013-12-15</deposition>
            <header_release>2014-03-19</header_release>
            <map_release>2014-03-19</map_release>
            <update>2016-02-17</update>
        </key_dates>
        <title>Characterization of Human Papilloma Virus Type 16 VLP</title>
        <authors_list>
            <author>Zhao Q</author>
            <author>Potter CS</author>
            <author>Carragher B</author>
            <author>Lander G</author>
            <author>Sworen J</author>
            <author>Towne V</author>
            <author>Abraham D</author>
            <author>Duncan P</author>
            <author>Washabaugh MW</author>
            <author>Sitrin RD</author>
        </authors_list>
        <keywords>Human Papilloma Virus Type 16 VLP</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Zhao Q</author>
                    <author order="2">Potter CS</author>
                    <author order="3">Carragher B</author>
                    <author order="4">Lander G</author>
                    <author order="5">Sworen J</author>
                    <author order="6">Towne V</author>
                    <author order="7">Abraham D</author>
                    <author order="8">Duncan P</author>
                    <author order="9">Washabaugh MW</author>
                    <author order="10">Sitrin RD</author>
                    <title>Characterization of Virus-Like Particles in GARDASIL by Cryo Transmission Electron Microscopy</title>
                    <journal>Hum.Vaccin.Immunother.</journal>
                    <volume>10</volume>
                    <first_page>734</first_page>
                    <last_page>739</last_page>
                    <year>2014</year>
                    <external_references type="PUBMED">24299977</external_references>
                    <external_references type="DOI">doi:10.4161/hv.27316</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
    </crossreferences>
    <sample>
        <name>Human Papilloma Virus Type 16 VLP</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>Human Papilloma Virus Type 16 VLP</name>
                <number_unique_components>1</number_unique_components>
            </sample_supramolecule>
            <virus_supramolecule supramolecule_id="1">
                <name>Human papillomavirus</name>
                <sci_species_name ncbi="10566">Human papillomavirus</sci_species_name>
                <natural_host database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                    <synonym_organism>VERTEBRATES</synonym_organism>
                </natural_host>
                <host_system database="NCBI" />
                <virus_type>VIRUS-LIKE PARTICLE</virus_type>
                <virus_isolate>SEROTYPE</virus_isolate>
                <virus_enveloped>false</virus_enveloped>
                <virus_empty>true</virus_empty>
                <sci_species_serotype>Type 16</sci_species_serotype>
            </virus_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <instrument>FEI VITROBOT MARK II</instrument>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI F20</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">120</acceleration_voltage>
                    <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
                    <date>2006-11-29</date>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="CCD">GATAN ULTRASCAN 4000 (4k x 4k)</film_or_detector_model>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <final_reconstruction>
                    <resolution res_type="BY AUTHOR" units="&#8491;">13.0</resolution>
                    <resolution_method>OTHER</resolution_method>
                    <software_list>
                        <software>
                            <name>EMAN</name>
                        </software>
                    </software_list>
                    <number_images_used>5135</number_images_used>
                </final_reconstruction>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
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        <file>emd_5839.map.gz</file>
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            <space_group>1</space_group>
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            <col>180</col>
            <row>180</row>
            <sec>180</sec>
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        <origin>
            <col>-90</col>
            <row>-90</row>
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            <a units="&#8491;">586.8</a>
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            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
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        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-4.48136425</minimum>
            <maximum>5.85216093</maximum>
            <average>0.02206318</average>
            <std>0.89059055</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">3.26</x>
            <y units="&#8491;">3.26</y>
            <z units="&#8491;">3.26</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>1.0</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <annotation_details>Reconstruction of HPV Type 16 VLP</annotation_details>
        <details>::::EMDATABANK.org::::EMD-5839::::</details>
    </map>
    <interpretation>
        <figure_list>
            <figure>
                <file>emd_5839.png</file>
            </figure>
        </figure_list>
    </interpretation>
</emd>