2026-06-10 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY PDBe PDBe 2026-05-19 2026-06-10 2026-06-10 2026-06-10 European Molecular Biology Organization (EMBO) ALTF-721-2024 European Union Medical Research Council (MRC, United Kingdom) MC_UP_1201/29 United Kingdom Subtomogram average of E. scolopes ribosome So-Last MGF Allegretti MA cytoplasm, translation, ribonucleoprotein complex, RIBOSOME Gundlach KA Schiotz OH Ladinsky M Raimann C Rheinberger M Beck F Gunduz B Langelaan R Rucklin M Limpens RW Ruby EG McFall-Ngai M Plitzko JM Briegel A Nanoscale imaging of native symbiotic animal tissue using a multimodal large volume imaging pipeline for cryo-electron tomography Biorxiv US 2025 doi:10.1101/2025.11.30.691379 2692-8205 EMDB EMD-58190 associated EM volume Vibrio fischeri within the light organ crypt of Euprymna scolopes Vibrio fischeri within the light organ crypt of Euprymna scolopes 0
Symbiotic Vibrio fischeri cells within the crypt epithelium of the juvenile Hawaiian bobtail squid (Euprymna scolopes) light organ. Animals were colonised, dissected, and high pressure frozen. The light organ region containing colonised crypts was localised by correlative cryo fluorescence microscopy and microCT, and cryo lamellae of the host symbiont interface were prepared by cryo FIB lift out for cryo electron tomography. Sample preparation is described in Gundlach, Schioetz et al., bioRxiv 2025.11.30.691379.
Euprymna scolopes subtomogramAveraging tissue 7.0 OTHER
We reprocessed the data from https://www.biorxiv.org/content/10.1101/2025.11.30.691379v1.abstract
 TFS KRIOS FLOOD BEAM BRIGHT FIELD OTHER 300 1.5 5.0 FEI FALCON IV (4k x 4k) 2.0 1 C1 6.6 FSC 0.143 CUT-OFF M 2.0.0dev36 10334 37 10334 Warp NOTE: we used easymode (github.com/mgflast/easymode) and Ais (github.com/bionanopatterning/Ais) PHASE FLIPPING ONLY MAXIMUM LIKELIHOOD RELION 5.0.0-dev emd_58190.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 334 334 334 0 0 0 334 334 334 501.0 501.0 501.0 90.0 90.0 90.0 X Y Z -0.0027266927 0.005515206 0.000024983614 0.0003264826 1.5 1.5 1.5 0.00133 AUTHOR emd_58190_msk_1.map emd_58190_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 334 334 334 0 0 0 334 334 334 501.0 501.0 501.0 90.0 90.0 90.0 X Y Z -0.013772064 0.013487809 0.000025261594 0.0015610366 1.5 1.5 1.5 AUTHOR emd_58190_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 334 334 334 0 0 0 334 334 334 501.0 501.0 501.0 90.0 90.0 90.0 X Y Z -0.012894134 0.013478509 0.000024705649 0.0015421525 1.5 1.5 1.5 AUTHOR