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    <admin>
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            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2013-09-27</deposition>
            <header_release>2013-10-23</header_release>
            <map_release>2014-04-23</map_release>
            <update>2014-05-14</update>
        </key_dates>
        <title>Structural mechanism of the dynein powerstroke</title>
        <authors_list>
            <author>Lin J</author>
            <author>Okada K</author>
            <author>Raytchev M</author>
            <author>Smith MC</author>
            <author>Nicastro D</author>
        </authors_list>
        <keywords>dynein movement, flagellar motility, axoneme</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Lin J</author>
                    <author order="2">Okada K</author>
                    <author order="3">Raytchev M</author>
                    <author order="4">Smith MC</author>
                    <author order="5">Nicastro D</author>
                    <title>Structural mechanism of the dynein power stroke.</title>
                    <journal>Nat. Cell Biol.</journal>
                    <volume>16</volume>
                    <first_page>479</first_page>
                    <last_page>485</last_page>
                    <year>2014</year>
                    <external_references type="PUBMED">24727830</external_references>
                    <external_references type="DOI">doi:10.1038/ncb2939</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>3j68</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
    </crossreferences>
    <sample>
        <name>Cryo-electron tomography and subtomographic average (2800 axonemal repeats) of active sea urchin sperm flagella reveal two distinct pre-powerstroke conformations: pre-I (detached) and pre-II (microtubule-bound).</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>Cryo-electron tomography and subtomographic average (2800 axonemal repeats) of active sea urchin sperm flagella reveal two distinct pre-powerstroke conformations: pre-I (detached) and pre-II (microtubule-bound).</name>
                <number_unique_components>1</number_unique_components>
            </sample_supramolecule>
            <organelle_or_cellular_component_supramolecule supramolecule_id="1">
                <name>dynein</name>
                <details>Sperm were frozen while actively beating.</details>
                <recombinant_exp_flag>false</recombinant_exp_flag>
                <natural_source database="NCBI">
                    <organism ncbi="7668">Strongylocentrotus purpuratus</organism>
                    <synonym_organism>sea urchin</synonym_organism>
                    <cell>sperm</cell>
                    <organelle>flagella</organelle>
                </natural_source>
                <recombinant_expression database="NCBI" />
            </organelle_or_cellular_component_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>subtomogramAveraging</method>
            <aggregation_state>cell</aggregation_state>
            <specimen_preparation_list>
                <subtomogram_averaging_preparation preparation_id="1">
                    <buffer>
                        <ph>8.0</ph>
                        <details>360 mM NaCl, 50 mM MgCl2, 10 mM CaCl2, 10 mM KCl, 30 mM HEPES, pH 8.0</details>
                    </buffer>
                    <grid>
                        <details>Quantifoil holey carbon grids Cu 200 mesh R2/2</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_temperature units="K">100</chamber_temperature>
                        <instrument>HOMEMADE PLUNGER</instrument>
                        <method>Blot for 1.5-2.5 seconds before plunging</method>
                    </vitrification>
                </subtomogram_averaging_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <subtomogram_averaging_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI F30</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_defocus_min units="&#181;m">6.0</nominal_defocus_min>
                    <nominal_defocus_max units="&#181;m">8.0</nominal_defocus_max>
                    <nominal_magnification>13500.0</nominal_magnification>
                    <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
                    <temperature>
                        <temperature_average units="K">80</temperature_average>
                    </temperature>
                    <specialist_optics>
                        <energy_filter>
                            <name>GATAN postcolumn filter GIF</name>
                            <lower_energy_threshold units="eV">0.0</lower_energy_threshold>
                            <upper_energy_threshold units="eV">20.0</upper_energy_threshold>
                        </energy_filter>
                    </specialist_optics>
                    <date>2012-04-07</date>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="CCD">GENERIC GATAN (2k x 2k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/&#8491;^2">100</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                    <specimen_holder>Liquid nitrogen cooled</specimen_holder>
                    <tilt_series>
                        <axis1>
                            <min_angle units="deg">-65</min_angle>
                            <max_angle units="deg">65</max_angle>
                        </axis1>
                    </tilt_series>
                </subtomogram_averaging_microscopy>
            </microscopy_list>
            <subtomogram_averaging_processing image_processing_id="1">
                <final_reconstruction>
                    <algorithm>OTHER</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">30.0</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>IMOD, PEET</name>
                        </software>
                    </software_list>
                    <details>Final maps were calculated by averaging 2800 particles from 41 tomograms. Axonemal repeats (96 nm long) from 41 tomograms (reconstructed using fiducial alignment and weighted backprojection, IMOD software, Kremer et al. 1996) were aligned and averaged using the PEET software (bio3d.colorado.edu, Nicastro et al. 2006). To obtain structures with consistent conformations, classification of the different conformational states of dynein was performed using a clustering approach implemented in PEET (Heumann et al. 2011).</details>
                    <number_subtomograms_used>2800</number_subtomograms_used>
                </final_reconstruction>
                <final_three_d_classification>
                    <number_classes>12</number_classes>
                </final_three_d_classification>
            </subtomogram_averaging_processing>
        </structure_determination>
    </structure_determination_list>
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        <file>emd_5758.map.gz</file>
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            <row>36</row>
            <sec>50</sec>
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            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
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        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
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            <minimum>96.787948610000001</minimum>
            <maximum>160.066650390000007</maximum>
            <average>123.910369869999997</average>
            <std>7.73233461</std>
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            <x units="&#8491;">9.856</x>
            <y units="&#8491;">9.856</y>
            <z units="&#8491;">9.856</z>
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        <contour_list>
            <contour primary="true">
                <level>127.0</level>
                <source>AUTHOR</source>
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        <annotation_details>Reconstruction of axonemal dyneins in pre-powerstroke states. The dyneins show two distinct pre-powerstroke conformations: pre-I (detached, bottom dynein) and pre-II (microtubule-bound, top dynein).</annotation_details>
        <details>::::EMDATABANK.org::::EMD-5758::::</details>
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