<emd emdb_id="EMD-5729" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2013-07-26</deposition>
            <header_release>2014-03-19</header_release>
            <map_release>2014-03-19</map_release>
            <update>2014-03-19</update>
        </key_dates>
        <title>Bcl10 filament</title>
        <authors_list>
            <author>Qiao Q</author>
            <author>Yang C</author>
            <author>Zheng C</author>
            <author>David L</author>
            <author>Yu X</author>
            <author>Fontan L</author>
            <author>Bracken WC</author>
            <author>Garcia M</author>
            <author>Melnick A</author>
            <author>Egelman EH</author>
            <author>Wu H</author>
        </authors_list>
        <keywords />
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Qiao Q</author>
                    <author order="2">Yang C</author>
                    <author order="3">Zheng C</author>
                    <author order="4">Fontan L</author>
                    <author order="5">David L</author>
                    <author order="6">Yu X</author>
                    <author order="7">Bracken C</author>
                    <author order="8">Rosen M</author>
                    <author order="9">Melnick A</author>
                    <author order="10">Egelman EH</author>
                    <author order="11">Wu H</author>
                    <title>Structural architecture of the CARMA1/Bcl10/MALT1 signalosome: nucleation-induced filamentous assembly.</title>
                    <journal>MOLECULAR CELL</journal>
                    <volume>51</volume>
                    <first_page>766</first_page>
                    <last_page>779</last_page>
                    <year>2013</year>
                    <external_references type="PUBMED">24074955</external_references>
                    <external_references type="DOI">doi:10.1016/j.molcel.2013.08.032</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
    </crossreferences>
    <sample>
        <name>Bcl10</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>Bcl10</name>
                <oligomeric_state>helical polymer</oligomeric_state>
                <number_unique_components>1</number_unique_components>
            </sample_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>Bcl10</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                    <synonym_organism>human</synonym_organism>
                </natural_source>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="32644">unidentified</recombinant_organism>
                </recombinant_expression>
                <sequence />
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>helical</method>
            <aggregation_state>filament</aggregation_state>
            <specimen_preparation_list>
                <helical_preparation preparation_id="1">
                    <staining>
                        <type>NEGATIVE</type>
                        <details>1% uranyl acetate</details>
                    </staining>
                    <grid>
                        <details>300 mesh copper grid with thin carbon support, glow discharged</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>NONE</cryogen_name>
                        <instrument>OTHER</instrument>
                    </vitrification>
                </helical_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <helical_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI 12</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>TUNGSTEN HAIRPIN</electron_source>
                    <acceleration_voltage units="kV">120</acceleration_voltage>
                    <nominal_cs units="mm">2.0</nominal_cs>
                    <specimen_holder_model>OTHER</specimen_holder_model>
                    <date>2012-01-01</date>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                            <digitization_details>
                                <scanner>NIKON SUPER COOLSCAN 9000</scanner>
                            </digitization_details>
                            <bits_per_pixel>14.</bits_per_pixel>
                        </image_recording>
                    </image_recording_list>
                </helical_microscopy>
            </microscopy_list>
            <helical_processing image_processing_id="1">
                <details>The particles were reconstructed using IHRSR.</details>
                <final_reconstruction>
                    <applied_symmetry>
                        <helical_parameters>
                            <delta_z units="&#8491;">5.0</delta_z>
                            <delta_phi units="deg">100.9</delta_phi>
                        </helical_parameters>
                    </applied_symmetry>
                    <resolution res_type="BY AUTHOR" units="&#8491;">20.0</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>IHRSR, Spider</name>
                        </software>
                    </software_list>
                </final_reconstruction>
            </helical_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="3908">
        <file>emd_5729.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>100</col>
            <row>100</row>
            <sec>100</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>100</x>
            <y>100</y>
            <z>100</z>
        </spacing>
        <cell>
            <a units="&#8491;">416.0</a>
            <b units="&#8491;">416.0</b>
            <c units="&#8491;">416.0</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.26180375</minimum>
            <maximum>0.81234527</maximum>
            <average>0.00962873</average>
            <std>0.06774642</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">4.16</x>
            <y units="&#8491;">4.16</y>
            <z units="&#8491;">4.16</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.05</level>
                <source>EMDB</source>
            </contour>
        </contour_list>
        <annotation_details>IHRSR reconstruction of Bcl10 filament</annotation_details>
        <details>::::EMDATABANK.org::::EMD-5729::::</details>
    </map>
</emd>