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    <admin composite_map="true">
        <current_status>
            <date>2026-09-30</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <revision_history>
            <revision version="1.0" date="2026-09-30">
                <change_list>
                    <model>
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
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                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </metadata>
                </change_list>
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        </revision_history>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2026-03-18</deposition>
            <header_release>2026-09-30</header_release>
            <map_release>2026-09-30</map_release>
            <update>2026-09-30</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>Biotechnology and Biological Sciences Research Council (BBSRC)</funding_body>
                <country>United Kingdom</country>
            </grant_reference>
        </grant_support>
        <title>Composite cryo-EM map of the human DNAAF19-RUVBL1/2-DPCD complex</title>
        <authors_list>
            <author>Wood E</author>
            <author>Ochi T</author>
        </authors_list>
        <keywords>Motile cilia, protein complex assembly, Dynein axonemal assembly factor, CHAPERONE</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">de Almeida Gomes M</author>
                    <author ORCID="0009-0001-2516-615X" order="2">Wood E</author>
                    <author order="3">Burgoyne T</author>
                    <author order="4">Batrinu D</author>
                    <author order="5">Klose F</author>
                    <author order="6">Boldt K</author>
                    <author order="7">Beyer T</author>
                    <author order="8">Khan GN</author>
                    <author order="9">Mitchison H</author>
                    <author ORCID="0000-0001-8546-6341" order="10">Ochi T</author>
                    <title>DNAAF19-RUVBL1/2 complex recruits multiple adaptors to promote dynein arm assembly</title>
                    <journal_abbreviation>Proc.Natl.Acad.Sci.USA</journal_abbreviation>
                    <country>US</country>
                    <year>2026</year>
                    <external_references type="DOI">doi:10.1073/pnas.2612755123</external_references>
                    <external_references type="ISSN">1091-6490</external_references>
                    <external_references type="CSD">0040</external_references>
                    <external_references type="ASTM">PNASA6</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-57215</emdb_id>
                <relationship>
                    <other>consensus EM volume</other>
                </relationship>
                <details>Consensus map of human DNAAF19-RUVBL1/2-DPCD</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-57217</emdb_id>
                <relationship>
                    <other>focused EM volume</other>
                </relationship>
                <details>Focused map of human DNAAF19-RUVBL1/2 without the external DII domains</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-57219</emdb_id>
                <relationship>
                    <other>focused EM volume</other>
                </relationship>
                <details>Focused map of the external DII domain of RUVBL2 in complex with DPCD (subunit A)</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-57221</emdb_id>
                <relationship>
                    <other>focused EM volume</other>
                </relationship>
                <details>Focused map of the external DII domain of RUVBL2 in complex with DPCD (subunit B)</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-57234</emdb_id>
                <relationship>
                    <other>focused EM volume</other>
                </relationship>
                <details>Focused map of the external DII domain of RUVBL2 in complex with DPCD (subunit C)</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-57238</emdb_id>
                <relationship>
                    <other>focused EM volume</other>
                </relationship>
                <details>Focused map of the external DII domain of RUVBL2 in complex with DPCD (subunit D)</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-57239</emdb_id>
                <relationship>
                    <other>focused EM volume</other>
                </relationship>
                <details>Focused map of the external DII domain of RUVBL2 in complex with DPCD (subunit E)</details>
            </emdb_reference>
        </emdb_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>29kn</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
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            </pdb_reference>
        </pdb_list>
        <other_db_list>
            <db_reference>
                <db_name>EMDB</db_name>
                <accession_id>EMD-57215</accession_id>
                <content_type>consensus EM volume</content_type>
                <details>Consensus map of human DNAAF19-RUVBL1/2-DPCD</details>
            </db_reference>
            <db_reference>
                <db_name>EMDB</db_name>
                <accession_id>EMD-57217</accession_id>
                <content_type>focused EM volume</content_type>
                <details>Focused map of human DNAAF19-RUVBL1/2 without the external DII domains</details>
            </db_reference>
            <db_reference>
                <db_name>EMDB</db_name>
                <accession_id>EMD-57219</accession_id>
                <content_type>focused EM volume</content_type>
                <details>Focused map of the external DII domain of RUVBL2 in complex with DPCD (subunit A)</details>
            </db_reference>
            <db_reference>
                <db_name>EMDB</db_name>
                <accession_id>EMD-57221</accession_id>
                <content_type>focused EM volume</content_type>
                <details>Focused map of the external DII domain of RUVBL2 in complex with DPCD (subunit B)</details>
            </db_reference>
            <db_reference>
                <db_name>EMDB</db_name>
                <accession_id>EMD-57234</accession_id>
                <content_type>focused EM volume</content_type>
                <details>Focused map of the external DII domain of RUVBL2 in complex with DPCD (subunit C)</details>
            </db_reference>
            <db_reference>
                <db_name>EMDB</db_name>
                <accession_id>EMD-57238</accession_id>
                <content_type>focused EM volume</content_type>
                <details>Focused map of the external DII domain of RUVBL2 in complex with DPCD (subunit D)</details>
            </db_reference>
            <db_reference>
                <db_name>EMDB</db_name>
                <accession_id>EMD-57239</accession_id>
                <content_type>focused EM volume</content_type>
                <details>Focused map of the external DII domain of RUVBL2 in complex with DPCD (subunit E)</details>
            </db_reference>
            <db_reference>
                <db_name>EMDB</db_name>
                <accession_id>EMD-57241</accession_id>
                <content_type>associated EM volume</content_type>
                <details>Composite cryo-EM map of the human DNAAF19-RUVBL1/2-DPCD complex</details>
            </db_reference>
        </other_db_list>
    </crossreferences>
    <sample>
        <name>Ternary complex comprised of RUVBL1, RUVBL2, DNAAF19, DPCD</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Ternary complex comprised of RUVBL1, RUVBL2, DNAAF19, DPCD</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>2</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>3</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>4</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>RuvB-like 1</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.050296914</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA
LAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIG
LKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL
HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALE
SSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTK
TTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQQDKYMK</string>
                    <external_references type="UNIPROTKB">Q9Y265</external_references>
                </sequence>
                <ec_number>3.6.4.12</ec_number>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name>RuvB-like 2</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.051222464999999995</theoretical>
                </molecular_weight>
                <number_of_copies>5</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MATVTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPG
TGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGK
LTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVH
TVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDM
APVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLR
YAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGETMDTS</string>
                    <external_references type="UNIPROTKB">Q9Y230</external_references>
                </sequence>
                <ec_number>3.6.4.12</ec_number>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="3">
                <name>Dynein axonemal assembly factor 19</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.027400103999999998</theoretical>
                </molecular_weight>
                <details>Three residual residues (GGS) after removing a N-terminal lipoyl tag.</details>
                <number_of_copies>1</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>GGSMERNDIINFKALEKELQAALTADEKYKRENAAKLRAVEQRVASYEEFRGIVLASHLKPLERKDKMGGKRTVPWNCHT
IQGRTFQDVATEISPEKAPLQPETSADFYRDWRRHLPSGPERYQALLQLGGPRLGCLFQTDVGFGLLGELLVALADHVGP
ADRAAVLGILCSLASTGRFTLNLSLLSRAERESCKGLFQKLQAMGNPRSVKEGLSWEEQGLEEQSGGLQEEERLLQELLE
LYQVD</string>
                    <external_references type="UNIPROTKB">Q8IW40</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="4">
                <name>Protein DPCD</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.023420925999999998</theoretical>
                </molecular_weight>
                <details>Two residual residues (GS) after removing a N-terminal GST tag.</details>
                <number_of_copies>5</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>GSMAVTGWLESLRTAQKTALLQDGRRKVHYLFPDGKEMAEEYDEKTSELLVRKWRVKSALGAMGQWQLEVGDPAPLGAGN
LGPELIKESNANPIFMRKDTKMSFQWRIRNLPYPKDVYSVSVDQKERCIIVRTTNKKYYKKFSIPDLDRHQLPLDDALLS
FAHANCTLIISYQKPKEVVVAESELQKELKKVKTAHSNDGDCKTQ</string>
                    <external_references type="UNIPROTKB">Q9BVM2</external_references>
                </sequence>
            </protein_or_peptide>
            <ligand macromolecule_id="5">
                <name>ADENOSINE-5'-DIPHOSPHATE</name>
                <molecular_weight>
                    <theoretical units="MDa">0.000427201</theoretical>
                </molecular_weight>
                <number_of_copies>4</number_of_copies>
                <formula>ADP</formula>
            </ligand>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>7.5</ph>
                        <component>
                            <concentration units="mM">20.0</concentration>
                            <formula>C8H18N2O4S</formula>
                            <name>HEPES</name>
                        </component>
                        <component>
                            <concentration units="mM">250.0</concentration>
                            <formula>NaCl</formula>
                            <name>Sodium chloride</name>
                        </component>
                        <component>
                            <concentration units="mM">2.0</concentration>
                            <formula>C4H10O2S2</formula>
                            <name>DTT</name>
                        </component>
                    </buffer>
                    <grid>
                        <model>Quantifoil R1.2/1.3</model>
                        <material>COPPER</material>
                        <mesh>300</mesh>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                            <time units="s">100</time>
                            <atmosphere>AIR</atmosphere>
                        </pretreatment>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">100</chamber_humidity>
                        <chamber_temperature units="K">277</chamber_temperature>
                        <instrument>FEI VITROBOT MARK IV</instrument>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>TFS KRIOS</microscope>
                    <illumination_mode>SPOT SCAN</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_defocus_min units="µm">0.9</nominal_defocus_min>
                    <nominal_defocus_max units="µm">3.0</nominal_defocus_max>
                    <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI FALCON IV (4k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/Å^2">50.56</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <ctf_correction>
                    <type>PHASE FLIPPING AND AMPLITUDE CORRECTION</type>
                </ctf_correction>
                <startup_model type_of_model="INSILICO MODEL"/>
                <final_reconstruction>
                    <resolution units="Å" res_type="BY AUTHOR">3.37</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>PHENIX</name>
                            <version>1.21.1</version>
                        </software>
                    </software_list>
                    <number_images_used>363543</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="48669">
        <file>emd_57241.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>230</col>
            <row>230</row>
            <sec>230</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>230</x>
            <y>230</y>
            <z>230</z>
        </spacing>
        <cell>
            <a units="Å">340.4</a>
            <b units="Å">340.4</b>
            <c units="Å">340.4</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>Z</fast>
            <medium>Y</medium>
            <slow>X</slow>
        </axis_order>
        <statistics>
            <minimum>-9.931487000000001</minimum>
            <maximum>29.020092000000002</maximum>
            <average>0.0036430215</average>
            <std>1.0554532</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.48</x>
            <y units="Å">1.48</y>
            <z units="Å">1.48</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>5.0</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-57241::::</label>
        <annotation_details>Composite map of human DNAAF19-RUVBL1/2-DPCD</annotation_details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <initial_model>
                    <access_code>29JR</access_code>
                    <chain>
                        <source_name>PDB</source_name>
                        <initial_model_type>experimental model</initial_model_type>
                    </chain>
                </initial_model>
                <refinement_protocol>RIGID BODY FIT</refinement_protocol>
                <details>DNAAF19-RUVBL1/2 without their external DII domains</details>
            </modelling>
            <modelling>
                <initial_model>
                    <chain>
                        <source_name>AlphaFold</source_name>
                        <initial_model_type>in silico model</initial_model_type>
                    </chain>
                </initial_model>
                <refinement_protocol>AB INITIO MODEL</refinement_protocol>
                <details>The external DII domains of RUVBL2 in complex with DPCD</details>
            </modelling>
        </modelling_list>
    </interpretation>
</emd>
