REL RCSB RCSB RCSB 2013-06-03 2013-07-03 2013-10-16 2013-11-20 Protein-Ligand Interactions by Electron Microscopy: a Disaccharide receptor analog complex of Adeno-Associated Virus Xie Q Spilman M Meyer N Lerch T Stagg S Chapman M Adeno-Associated Virus, contrast transfer function, heparin-binding domain, heparan sulfate proteoglycan, Virus-like particle Xie Q Spilman M Meyer NL Lerch TF Stagg SM Chapman MS Electron microscopy analysis of a disaccharide analog complex reveals receptor interactions of adeno-associated virus. J.STRUCT.BIOL. 184 129 135 2013 24036405 doi:10.1016/j.jsb.2013.09.004 3j4p FULLOVERLAP Recombinant Adeno-Associated virus DJ with Sucrose Octasulfate Recombinant Adeno-Associated virus DJ with Sucrose Octasulfate one virus subunit binds to one molecule of sucrose octasulfate 2 3.7 3.7 Adeno-associated virus Adeno-associated virus Homo sapiens VERTEBRATES Spodoptera frugiperda sf9 pAVDJ 3.7 3.7 275 1 VIRUS-LIKE PARTICLE SEROTYPE false true Recombinant Adeno-Associated Virus DJ, AAVDJ DJ singleParticle particle 1.5 6.8
10 mM Tris, 125 mM NaCl, 1 mM MgCl2
400 mesh carbon-coated grids (C-flat) glow-discharged for 5 seconds (Gatan Model 950)
 ETHANE 100 FEI VITROBOT MARK IV Both sides of the grid were blotted for 2.5 seconds. FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 120 2.7 0.8 2.0 120000.0 FEI TITAN KRIOS AUTOGRID HOLDER 94 Objective lens astigmatism was corrected at 120,000 times magnification 2013-04-15 GATAN ULTRASCAN 4000 (4k x 4k) 5207 15 Liquid nitrogen cooled
Particles were processed semi-automatically using Appion for picking, contrast transfer function (CTF) estimation, and stack making. Particles were selected automatically using template matching.
CTF correction of each particle
 OTHER 4.8 FSC 0.143 CUT-OFF FREALIGN
Final map was amplitude corrected using embfactor.
45000
Frealign convention
 emd_5681.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 272 272 272 -136 -136 -136 272 272 272 355.4224 355.4224 355.4224 90.0 90.0 90.0 X Y Z -5.81486082 12.86448002 0.26637372 1.47994912 1.3067 1.3067 1.3067 3.0 AUTHOR Reconstruction of Adeno-Associated Virus DJ
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 3J1Q A RIGID BODY FIT Chimera CC REAL 25.0