<emd emdb_id="EMD-5679" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2013-05-30</deposition>
            <header_release>2013-06-26</header_release>
            <map_release>2013-08-14</map_release>
            <update>2013-09-18</update>
        </key_dates>
        <title>Electron Microscopy of the Aquaporin-0/Calmodulin Complex</title>
        <authors_list>
            <author>Reichow SL</author>
            <author>Clemens DM</author>
            <author>Freites JA</author>
            <author>Nemeth-Cahalan KL</author>
            <author>Heyden M</author>
            <author>Tobias DJ</author>
            <author>Hall JE</author>
            <author>Gonen T</author>
        </authors_list>
        <keywords>aquaporin, calmodulin, calcium regulation, water channel, membrane protein complex, electron microscopy</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Reichow SL</author>
                    <author order="2">Clemens DM</author>
                    <author order="3">Freites JA</author>
                    <author order="4">Nemeth-Cahalan KL</author>
                    <author order="5">Heyden M</author>
                    <author order="6">Tobias DJ</author>
                    <author order="7">Hall JE</author>
                    <author order="8">Gonen T</author>
                    <title>Allosteric mechanism of water-channel gating by Ca2+-calmodulin.</title>
                    <journal>NAT.STRUCT.MOL.BIOL.</journal>
                    <volume>20</volume>
                    <first_page>1085</first_page>
                    <last_page>1092</last_page>
                    <year>2013</year>
                    <external_references type="PUBMED">23893133</external_references>
                    <external_references type="DOI">doi:10.1038/nsmb.2630</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>3j41</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
    </crossreferences>
    <sample>
        <name>Aquaporin-0 bound to Calmodulin</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>Aquaporin-0 bound to Calmodulin</name>
                <details>Sample was prepared for electron microscopy with negative stain</details>
                <oligomeric_state>One tetramer of Aquaporin-0 bound to 2 molecules of Calmodulin</oligomeric_state>
                <number_unique_components>2</number_unique_components>
                <molecular_weight>
                    <experimental units="MDa">0.13</experimental>
                    <theoretical units="MDa">0.13</theoretical>
                    <method>Size-exclusion Chromatography and SDS-PAGE</method>
                </molecular_weight>
            </sample_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name synonym="AQP0, MIP">Aquaporin-0</name>
                <natural_source database="NCBI">
                    <organism ncbi="9940">Ovis aries</organism>
                    <synonym_organism>Sheep</synonym_organism>
                    <tissue>eye lens</tissue>
                    <cell>fiber cell</cell>
                    <cellular_location>plasma membrane</cellular_location>
                </natural_source>
                <molecular_weight>
                    <experimental units="MDa">0.025</experimental>
                    <theoretical units="MDa">0.025</theoretical>
                </molecular_weight>
                <details>Crosslinked to Calmodulin using EDC/NHS</details>
                <number_of_copies>4</number_of_copies>
                <oligomeric_state>tetramer</oligomeric_state>
                <recombinant_exp_flag>false</recombinant_exp_flag>
                <recombinant_expression database="NCBI" />
                <sequence>
                    <external_references type="UNIPROTKB">Q6J819</external_references>
                    <external_references type="INTERPRO">IPR000425</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name synonym="CaM">Calmodulin</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                    <synonym_organism>Human</synonym_organism>
                    <cellular_location>cytoplasmic</cellular_location>
                </natural_source>
                <molecular_weight>
                    <experimental units="MDa">0.017</experimental>
                    <theoretical units="MDa">0.017</theoretical>
                </molecular_weight>
                <details>Calmodulin crosslinked to Aquaporin-0</details>
                <number_of_copies>2</number_of_copies>
                <oligomeric_state>monomer</oligomeric_state>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                    <recombinant_strain>BL21</recombinant_strain>
                    <recombinant_plasmid>pET</recombinant_plasmid>
                </recombinant_expression>
                <sequence>
                    <external_references type="UNIPROTKB">P62158</external_references>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">0.02</concentration>
                    <buffer>
                        <ph>7.4</ph>
                        <details>25mM HEPES, 5mM CaCl2, 0.3% decylmaltoside</details>
                    </buffer>
                    <staining>
                        <type>NEGATIVE</type>
                        <details>0.75% uranyl formate</details>
                    </staining>
                    <grid>
                        <details>400 mesh carbon coated grid (Ted Pella)</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>NONE</cryogen_name>
                        <instrument>OTHER</instrument>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI 12</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>LAB6</electron_source>
                    <acceleration_voltage units="kV">120</acceleration_voltage>
                    <nominal_cs units="mm">2</nominal_cs>
                    <nominal_defocus_min units="&#181;m">1.0</nominal_defocus_min>
                    <nominal_defocus_max units="&#181;m">2.0</nominal_defocus_max>
                    <nominal_magnification>52000.0</nominal_magnification>
                    <calibrated_magnification>52000.0</calibrated_magnification>
                    <specimen_holder_model>OTHER</specimen_holder_model>
                    <alignment_procedure>
                        <legacy>
                            <astigmatism>Objective lens astigmatism was corrected at 100,000 times magnification</astigmatism>
                            <electron_beam_tilt_params>0</electron_beam_tilt_params>
                        </legacy>
                    </alignment_procedure>
                    <date>2010-02-25</date>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                            <digitization_details>
                                <scanner>NIKON SUPER COOLSCAN 9000</scanner>
                                <sampling_interval units="&#181;m">6.35</sampling_interval>
                            </digitization_details>
                            <number_real_images>200</number_real_images>
                            <average_electron_dose_per_image units="e/&#8491;^2">15</average_electron_dose_per_image>
                            <bits_per_pixel>16.</bits_per_pixel>
                        </image_recording>
                    </image_recording_list>
                    <tilt_angle_min>0</tilt_angle_min>
                    <tilt_angle_max>50</tilt_angle_max>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <details>Particles were selected from a tilted pair dataset at 0 and 50 degree tilt using SPIDER. An initial reconstruction was generated using random conical tilt methods in SPIDER and refined in FREALIGN</details>
                <ctf_correction>
                    <details>CTF-TILT, each micrograph</details>
                </ctf_correction>
                <final_reconstruction>
                    <algorithm>OTHER</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">25.0</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>SPIDER, FREALIGN</name>
                        </software>
                    </software_list>
                    <details>Final Map with C2 Symmetry and Filtered to 25 Angstrom</details>
                    <number_images_used>11720</number_images_used>
                </final_reconstruction>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="1125">
        <file>emd_5679.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>66</col>
            <row>66</row>
            <sec>66</sec>
        </dimensions>
        <origin>
            <col>-33</col>
            <row>-33</row>
            <sec>-33</sec>
        </origin>
        <spacing>
            <x>66</x>
            <y>66</y>
            <z>66</z>
        </spacing>
        <cell>
            <a units="&#8491;">262.68</a>
            <b units="&#8491;">262.68</b>
            <c units="&#8491;">262.68</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-3.1143434</minimum>
            <maximum>8.37446785</maximum>
            <average>-0.00000001</average>
            <std>1.0</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">3.9799998</x>
            <y units="&#8491;">3.9799998</y>
            <z units="&#8491;">3.9799998</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>4.96</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <annotation_details>3D Reconstruction of the Aquaporin-0/Calmodulin Complex</annotation_details>
        <details>::::EMDATABANK.org::::EMD-5679::::</details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <initial_model>
                    <access_code>2B6P</access_code>
                    <chain>
                        <chain_id>A</chain_id>
                    </chain>
                </initial_model>
                <refinement_protocol>RIGID BODY FIT</refinement_protocol>
                <software_list>
                    <software>
                        <name>Chimera</name>
                    </software>
                </software_list>
                <target_criteria>cross-correlation</target_criteria>
                <refinement_space>REAL</refinement_space>
            </modelling>
        </modelling_list>
        <figure_list>
            <figure>
                <file>emd_5679.tif</file>
            </figure>
        </figure_list>
    </interpretation>
</emd>