REL RCSB RCSB RCSB 2013-05-21 2013-06-26 2013-08-28 2013-11-06 Electron cryo-microscopy of enterovirus 71 complexed with a Fab fragment Lee H Cifuente JO Ashley RE Conway JF Makhov AM Tano Y Shimizu H Nishimura Y Hafenstein S EV71, enterovirus, HFMD, neutralizing antibody, Fab, cryoEM, strain-specific eptitope, VP1-145 Lee H Cifuente JO Ashley RE Conway JF Makhov AM Tano Y Shimizu H Nishimura Y Hafenstein S A strain-specific epitope of enterovirus 71 identified by cryo-electron microscopy of the complex with fab from neutralizing antibody. J.VIROL. 87 11363 11370 2013 23946455 doi:10.1128/JVI.01926-13 3j3z FULLOVERLAP Enterovirus 71 complexed with Fab Fragment of MA28-7 neutralizing antibody Enterovirus 71 complexed with Fab Fragment of MA28-7 neutralizing antibody 2 8.05 Human enterovirus 71
Fab fragment is bound on the virus surface
Human enterovirus 71 1095/Shiga Homo sapiens VERTEBRATES 8 VP1-4 300 1 VIRION STRAIN false false EV71 MA28-7 neutralizing antibody Fab fragment Mus musculus BALB/c mouse hybridomas fused with myeloma cells false singleParticle particle 1.0 7.5
10 mM Tris, 200 mM NaCl, 50 mM MgCl2
glow-discharged holey carbon Quantifoil electron microscopy grids
 ETHANE-PROPANE MIXTURE 95 76 FEI VITROBOT MARK III FEI TECNAI F20 SPOT SCAN BRIGHT FIELD FIELD EMISSION GUN 200 2 1.9 6.12 50000.0 48425.0 GATAN LIQUID NITROGEN 95 2011-02-02 KODAK SO-163 FILM NIKON SUPER COOLSCAN 9000 45 15
Selected particles were low-pass filtered at 10 Angstrom. Asymmetric reconstruction was performed with breaksym option in EMAN2.
Each image
 OTHER 23.4 FSC 0.5 CUT-OFF EMAN2
The breaksym option in EMAN2 was used to search for the icosahedrally-related orientations.
27026 2300 emd_5673.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 480 480 480 -240 -240 -240 480 480 480 590.4 590.4 590.4 90.0 90.0 90.0 X Y Z -8.519919399999999 13.191069600000001 0.15144682 1.46808076 1.23 1.23 1.23 1.0 AUTHOR Asymmetric reconstruction of ev71-Fab complex
::::EMDATABANK.org::::EMD-5673::::
 3GK8 H L RIGID BODY FIT Chimera
The Fab structure was fitted manually, then refined in Chimera.
correlation coefficient REAL