Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

2026-08-12 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY DERIVED_CALCULATIONS atom_site chem_comp_atom chem_comp_bond em_admin pdbx_struct_conn_angle struct_conn _atom_site.auth_atom_id _atom_site.label_atom_id _chem_comp_atom.atom_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _em_admin.last_update _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _struct_conn.ptnr1_label_atom_id EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update DATABASE_REFERENCES citation citation_author em_admin _citation.journal_volume _citation_author.identifier_ORCID _em_admin.last_update EXPERIMENTAL_SUMMARY citation citation_author em_admin _citation.journal_volume _citation_author.identifier_ORCID _em_admin.last_update DATABASE_REFERENCES citation_author em_admin _citation_author.identifier_ORCID _em_admin.last_update EXPERIMENTAL_SUMMARY citation_author em_admin _citation_author.identifier_ORCID _em_admin.last_update PDBe PDBe 2025-09-24 2026-05-13 2026-05-13 2026-08-12 Agence Nationale de la Recherche (ANR) France Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation) Madru C Bourgeois G Mechulam Y Schmitt E 70S, ribosome, Hibernation, Pyrococcus abyssi Madru C Bourgeois G Dulermo R Capeyrou R Joncour G Figuigui K Duchateau M Chamot-Rooke J Duboc C l'Haridon S Mc Teer L Kwapisz M Clouet-d'Orval B Bouvier M Mechulam Y Borrel G Schmitt E Flament D A family of ribosome hibernation factors widespread in Archaea. Nat Commun UK 17 2026 42045235 doi:10.1038/s41467-026-72341-8 2041-1723 9srd FULLOVERLAP EMDB EMD-55138 associated EM volume

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor Hib (Hib intermediate conformation)

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation) Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation) 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 Pyrococcus abyssi GE5 rRNA 23S Pyrococcus abyssi GE5 0.98430175 1 CGAGGGCUCGGGUAGAAGACC(4AC)GGUUGAUGGGGCGGGGAUGUAAGCGGGAAGGGUCAAC(4AC)GACCCGCUUAGU CUGCCGCCCCCAAUCGCC(4AC)GAGGUCCUGUCCCCCGAGGGGGUCAGGACACUAAGCCGCC(4AC)GGUGGAUGGCUC GGCUCGGGGCGC(4AC)GACGAAGGGCGUGGCAAGCUGCGAUAAGCCCCGGCGAGGCGCAGGCAGC(4AC)GUCGAACCG GGGAUUCC(4AC)GAAUGGGACCUCC(4AC)GCGGCUUAUGCCGCACUCCGGGGCAUAAGCCCCGGAGGGGGAACGCGGG GAAUUGAAACAUCUUAGUACC(4AC)GCAGGAAAAGAAA(OMG)CAAAAGCGAUGC(4AC)GUGAGUAGGGGCGAC (4AC)GAAAGCGGCACAGGGCAAACUGAACCCCGGGCCGACGAGGUUCGGGGGAUGUGGGGUUGUAGGGCCCCCGUAUGA GACCCUCGCGGGUGAAGC(4AC)GAAGUC(4AC)GCUGGAACGCGGCGCCGGAGAGGGUGAUAGCCCCGUAGGCGUAAGC CCGCAGGGUCUCGGGGGACCCUGAGUAC(4AC)GUCGGUUGGAUAUCCGGCGGGAAGCUGGGAGGCAUCGGCUCCCAACC CUAAAUACGUCCCGAGACCGAUAGCGAACUAGUA(OMC)(LHH)GUGAGGGAAAGCUGAAAAGCACCC(4AC)GGGAGGG GGGUGAAAAGAGCCUGAAACCGGGCGGCGAUAGGAGGGUGCGGCC(4AC)GAAAGGAAUGAGCCUCCCCGAAGGAAACCG CGGCGACGCGGGAGUACGAGGGGAGGGGACCGGGGUUGCACCGUCCGUCUUGAAACACGGGGCA(OMG)GGAGUUCGCGG C(4AC)GUGGCGAGGUUAAGGGGGUUAAGCCC(4AC)GUAGC(4AC)GCAGGGAAACCGACAUGCCCGCAGCCGGGCCUC GAGCCCGGUGAGGGGCGGGGUGCGAAAGCGCCCGGAGUCACGGCCGCGAGACC(4AC)(OMG)AAACCGGUCGAUCUAGC CCGGGGCAGGGUGAAGUCCCUCAACAGAGGGAUGGAGGCC(4AC)GCUAGGGGUGCUGAUGUGCAGUUCGCUCCCGUGAC CCCGGGCUAGGGGUGAAAGGCCAAUCGAGGC(4AC)GGAGAU(A2M)GCUGGUUCC(4AC)GC(4AC)GAAUCAUCCCGC AGGAUGGCCUCCCCGGAGGUAGGCGGUGGGGUAGAGCACUGAUUGGGGGUGCAGGGGGCGAAAGCCCCCGGCCCCCUGUC AAACUCCGAACCCACCGCCGCCGUAGAUGGGGGGAGUAGGGUGGCGGUGUAAGCCGUCCAC(4AC)GAGAGGGGAACAAC CCAGAC(4AC)GGGGUUAAGGCCCCAAAGUGCCGGCUAAGUGUUACUCCAAAGGGUGUCC(4AC)GGGCCUUAGACAGCG GGGAGGUAGGCUUAGAAGCAGCCAUCCUUUAAAGAGUGCGUAACAGCUCACCCGUCGAGGUCCGGGGCCCCGAAAAUGGA CGGGGCUCAAGCCGGCCGCCGAGACCCCGGCGCACGGACCGAUUGGUCCGUGAUCGGGUAGGCGGGCGUGC(4AC)GGUG GCGUAGAAGCCGGGCCGUAAGGUCCGGUGGAGCCGCCGGUAUCGCGGAUCCUGCCGGGAGUAGCAGCGUAGUCGGGUGAG AAUCC(4AC)GAC(4AC)GC(4AC)GGAGGGGCCAGGGUUCCACAGGCAAUGGUCGUCAGC(4AC)GUGGGUUAGUCGGU CCUAACCC(4AC)GCC(4AC)GUAACUCGGCGCGGGGGAAAGGGAAACGGGUUAAUAUUCC(4AC)GUAC(4AC)GCGGG GGUAGGUGCGGCAACGCAAGCC(4AC)GGAGGGUGACGCCUCGGGGUAGGCGGACCGGCCGAUGAGGCCGGCUAAGCGUA UAAGCC(4AC)GGGGAGUGC(4AC)GUAAUGGCGAGAAC(4AC)GGGUGAAAGCGCGAAUGGCCCCCCCGUUAGGGGGGU UCCGCCGAUCCCUGGGGCCCGUGAAAAGCCCUCCGGGAAUUCCGAUCCCC(4AC)GCGAC(4AC)GUAC(4AC)GAGAAC (4AC)GACACAGGUGCCCCUGGGUGAGAAGCCUAAGGCGUGUCGGGGGAAACC(4AC)GGC(4AC)GAGGGAACU(OMC) GGCAAACUGGCCC(4AC)GUAACUUCGGGAGAAGGGGUGCCUGCGGGUGCGUAACC(4AC)GCAGGUCGCAGUGACUAGG GGGGCC(4AC)GACUGUUUAAUAAAAACACAGGUCCCAGCUAGCC(4AC)GAAAGGGUUUGUACUGGGGC(4AC)GACGC CUGC(5MC)CAGUGCCGGUAUGUGAAGCCCGGGUACAACCGGGUGAAGCAC(4AC)G(OMG)UAAAC(OMG)GC(OMG)G GGGUAACUAUAAC(5MC)(5MC)UCUUAAGGU(A2M)GCGAAAUUC(5MC)UUGUCGGUUAAAUG(5MC)CGAC(5MC)U GCAUGAAUGGCGUAACGAGGUCCCCGCUGUCCCCGGCCGGGGCC(4AC)GGCGAAACCUCUGCCUGGCGCGCAUGCCAGG GACCCC(4AC)GGUGGGAAGCGAAGACCCCAUGGAGCUUUACUGCAGCCUGC(4AC)GUUGCCACGCGGCGGGGGGUGCG CAGCGUAGGCGGGAGGCGUCGAAGCCCGGCCUCCGGGUCGGGUGGAGCCGUCCAUGAGACACCGCCCACUCCUCGCCGCG UGGCUAACCCCCGAAAGGGGGGACAGCGGUAGGUGGGCAGUUUGGCUGGGGCGGCACGCCCC(4AC)GAAAAGGUAUCGG GGGCGCCCUAAGGUCGGCUCAGGCGGGUCAGGAAUC(4AC)GC(4AC)GUAGAGUGCAAGGGCAAAAGC(4AC)GGCCUG ACUGGACC(4AC)GUAACAGAGGCGGGUCCAGCCC(4AC)GAAAGGGUGGCCUAGCGAACCCCUGUGCCUCCC(4AC)GG UGGGGGCCAGGGAUGACAGAAAAGCUACCCUGG(OMG)GAUAACAGAGUCGUCUCGGGCGAGAGCCCAUAUCGACCC (4AC)GAGGCUUGCUACCU(5MC)GCUGUCGGCUCUUCCCAUCCUGGCCCUGCAGCAGGGGCCAAGGGUGGGGG(OMU)G UUCACCCAUUAAAGGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUCGGAUGCUAUCUACCGGGGGUGUUGGC (4AC)GCCUGAGGGGAAGGUGCCCUUAGUACGAGAGGAACAGGGCGC(4AC)GCGGCCUCUGGUCUAC(4AC)GGUUGUC CUCC(4AC)GGGCAUCGCCGGGCAGCUACGC(4AC)GCAGC(4AC)GAUAAGGCCUGAAGGCAUCUAAGGC(4AC)GAAG CGGCCCC(4AC)GAAAAUAGGCGGCCGUUC rRNA 16S Pyrococcus abyssi GE5 0.492728781 1 GGCCGUACUCCCUUAAUUC(4AC)GG(OMU)UGAUCCUGCCGGAGGCCACUGCUAUGGGGGUC(4AC)GACUAAGCCA (OMU)GCGAGUCAAGGGGGCGUCCCUUCUGGGACGCCACCGGCGGACGGCUCAGUAACACGUCGGUAAC(OMC)UACCCU CGGGAGGGGGAUAACCCCGGGAAACUGGGGCUAAUCCCCCAUAGGCCUGGGGUACUGGAAGGUCCCCAGGCCGAAAGGGA GCCGUAAGGCUCCGCCCGAGGAUGGGCCGGCGGC(LHH)GAUUAGGUAGUUGGUGGGGUAACGGCCCACCAAGC(4AC)G AAGAUCGGUACGGGC(4AC)GUGAGAGCGGGAGCC(4AC)GGAGAUGGACACUGAGACACGGGUCCAGGCCCUACGGGGC GCAGCAGGCGCGA(A2M)ACCUC(4AC)GCAAUGCGGGAAAC(4AC)GCGACGGGGGGACCCCCAGUGCCGUGCCUCUGG CACGGCUUUUCCGGAGUGUAAAAAGCUCCGGGAAUAAGG(OMG)CUG(OMG)GCAAGGC(4AC)GGUGGCAGCCGCCGCG GUAAUACCGGCGGCC(4AC)GAGUGGU(OMG)GCCACUAUUAUUGGG(5MC)CUAAAGCGGC(4AC)GUAGCCGGGCCCG UAAGUCCCUGGCGAAAUCCCACGGCUCAAC(4AC)GUGGGGCUCGCUGGGGAUACUGCGGGCCUUGGGAC(4AC)GGGAG AGGC(4AC)GGGGGUACCCCCGGGGUAGG(OMG)GUGAAAUCCUAUAAUCCCGGGG(OMG)GACCGCCAGUGG(5MC)GA AGGCGCC(4AC)GGCUGGAACGGGUC(4AC)GACGGUGAGGGC(4AC)GAAGGCCAGGGGAGCGAAC(4AC)GGAUUAGA UACCCGGGUAGUC(OMC)(OMU)GGCUGUAAAGGA(OMU)GCGGGCUAGGUGUCGGGCGAGCUUCGAGCUCGCCCGGUGC (4AC)G(OMU)AGGGAAGC(4AC)GUUAAG(OMC)C(4AC)GC(4AC)GCCUGGGGAGUACGGC(4AC)GCAA(OMG)G (5MC)UGAAACUUAAAGGAAUUGGCGGGGGAGCACUACAAGG(OMG)GUGGAGCGUGCGGUUUAAUU(OMG)GAU(B8H) CAACGCCGGGAACCUCAC(4AC)GGGGGCGACGGCAGGAUGAAGGCCAGGCUGAAGGUCUUGCCGGACGCGCCGAGAGGA GGUGCAUGGC(5MC)GC(4AC)GUCAGCUCGUA(OMC)(LHH)GUGAGGCGUCCACUUAAGUGUGGUAAC(OMG)AGCGA GACCCGCGCCCCCAGUUGCCAGUCCCUCCCGCUCGGGAGGGAGGCACUCUGGGGGGACUGCCGGCGAUAAGC(4AC)GGA GGAAGGGGCGGGCGACGGUAGGUCAG(OMU)AUGCCC(4AC)GAAACCCCCGGGCUACA(5MC)GCGCGCUACAAUGGGC GGGACAAUGGGUGC(4AC)GACCC(4AC)GAAAGGGGGAGGUAAUCCCCUAAACCCGCCCUCAGUUCGGAUCGCGGGCUG CAACUCGCCCGCGUGAAGCUGGAAUCCCUAGUACCCGCGCGUCAUCAUCGCGCGGCGAAUACGUCCCUGCUCCUUGCACA CAC(5MC)G(OMC)CCG(OMU)CACUCCACCCGAGCGGGGCCUAGGUGAGGCCCGAUCUCCUUCGGGAGGUCGGGUCGAG CCUAGGCUCCGUGAGGGGGGAGAAGUCG(UR3)A(6MZ)CAAGGUAGC(4AC)GUAGGGG(MA6)(MA6)CCUACGG (5MC)U(5MC)GAUCAC(5MC)UCCU rRNA 5S Pyrococcus abyssi GE5 0.041443777 1 ACGGCACGGCGGCCAUAGCGGGGGGGCCACACC(4AC)GGUCUCAUUUCGAACCCGGAAGUUAAGCCCCCCAGCGAUCCC GGUUGUACUGCCCUCCGAGAGGGGGCGGGAAGCCGGGGACGCCGCCGGCCAC 30S ribosomal protein S3Ae Pyrococcus abyssi GE5 0.022888067999999998 1 LEVO MAAKRRVSAAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDPEKVLNRVVEVTLKDITGDFLKGHVKLYFQVYDVKGQNAY TKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMVIAARRIQTSQERAIRKIMQEIIYKKAEELNFKDFVL EAVNGKIAAEIAKEAKKIYPLKKAEIRKIKVLGEPEVAA Q9V2K7 30S ribosomal protein S2 Pyrococcus abyssi GE5 0.023026865 1 LEVO MADEYLVPLDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLARFDPQSILAVSVRLYGQKPV KKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVIIITDPRADHQAMKEAIEIGIPIVALVDTENLLSYVDLAIPTNNKG RKALALIYWILAREILYNRGEISSREEFKIPVEEFEMKIVRR Q9V191 Zn-ribbon RNA-binding protein involved in translation Pyrococcus abyssi GE5 0.007163395 1 LEVO MAENVELKFEIPVCTSCGREITPREHATHFVCPNCGEAIIWRCETCRLLAKPYKCPKCGWEGP G8ZFK7 30S ribosomal protein S4 Pyrococcus abyssi GE5 0.02138191 1 LEVO MGDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAEIEREQLLARLKRL GLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF ANPQHPERMMIEKAKQGGEA P61992 30S ribosomal protein S4e Pyrococcus abyssi GE5 0.028246118999999997 1 LEVO MARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKD YKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFT SYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGRDKPRI SLP Q9V1U8 30S ribosomal protein S5 Pyrococcus abyssi GE5 0.026523903999999997 1 LEVO MSQEWKEYAKRVLDEWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRMTDSGRR VRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGP RGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEMIERYGIVVGRAMPASFTLE Q9V1V5 30S ribosomal protein S6e Pyrococcus abyssi GE5 0.014029460999999998 1 LEVO MATFKLVISDPKTGIAKQIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVKMEIRGGTDKDGFPMRPDIHG PRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVNVKLVY Q9UYS3 30S ribosomal protein S7 Pyrococcus abyssi GE5 0.024662818 1 LEVO MAKPLSERFFIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYK VAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDV ALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR Q9V109 30S ribosomal protein S8 Pyrococcus abyssi GE5 0.014772246 1 LEVO MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGKINKAGAIKPRFP VKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKGIGGRLIAYVY Q9V1V0 30S ribosomal protein S8e Pyrococcus abyssi GE5 0.014293733 1 LEVO MAIWQGRSLRKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKKVRLTAAAYANVFDKSGKGRKVRIIRV IENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVVNAILLEE Q9UZL4 30S ribosomal protein S9 Pyrococcus abyssi GE5 0.015293867 1 LEVO MRIIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDIDVKVQGGGFMGQAEAARI AIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR Q9V195 30S ribosomal protein S10 Pyrococcus abyssi GE5 0.011795769 1 LEVO MQKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATFDRWELRIHKRLIDIEADER AMRQIMRIRVPEDVTIEIELIS Q9V0V6 30S ribosomal protein S11 Pyrococcus abyssi GE5 0.01477295 1 LEVO MSEEQVNIKKKEKWGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVH IRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGRRGRRV P62010 30S ribosomal protein S12 Pyrococcus abyssi GE5 0.016477620999999998 1 LEVO MPGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKN GKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPRR P61994 30S ribosomal protein S14 type Z Pyrococcus abyssi GE5 0.006644064 1 LEVO MAKADYNKRKPRKFGKGARRCIRCGQYGPIIRIHGLMLCRHCFREVAPKLGFRKYE P62012 30S ribosomal protein S15 Pyrococcus abyssi GE5 0.018697143 1 LEVO MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGIPTVKLFRDPDNPNRKLTITR ILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLVR Q9V2K9 30S ribosomal protein S17 Pyrococcus abyssi GE5 0.013364603999999999 1 LEVO MVRDIGLRIQPPAEKCDDPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLKKYERYELRRSRIHAHNPPCINA KVGDRVLIAETRPLSKTKHFVVVAVLERAEERR Q9V1U5 30S ribosomal protein S17e Pyrococcus abyssi GE5 0.008059528 1 LEVO MGKIRQGFIKRVARELFNKYPNEFTRDFEHNKKKVEELTNVTSKKIRNRIAGYITKLVRMKEEGKIL Q9V0G0 30S ribosomal protein S19e Pyrococcus abyssi GE5 0.01742225 1 LEVO MATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYLDGPVGIERLRTYYGGR KNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIATELKKELEEIIPELKKY Q9V0G8 30S ribosomal protein S24e Pyrococcus abyssi GE5 0.011798637 2 LEVO MEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKYYYDKDRMLY IEPEYILIRDGIIEKKEGE Q9UY20 30S ribosomal protein S27e Pyrococcus abyssi GE5 0.007186609 1 LEVO MALPRNVIPMPRSRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKILEVLE Q9UXZ3 30S ribosomal protein S28e Pyrococcus abyssi GE5 0.008102305 1 LEVO MAEDEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIKSRR P61029 30S ribosomal protein S27ae Pyrococcus abyssi GE5 0.005992167999999999 1 LEVO MGQKWKLYIVKDGKVIRKNKFCPRCGPGVFMADHGDRWACGRCGYTEWKKK P61238 30S ribosomal protein S3 Pyrococcus abyssi GE5 0.023472309 1 LEVO MAIERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQI DVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAET LVSKGYAQALLKLGVIGVKVAIMPPDARLPDEIEIIEKPVEEEVSSNEAE Q9V1U1 Small ribosomal subunit protein eS32 Pyrococcus abyssi GE5 0.005023395 1 LEVO MKRRPRKWKKKGRMRWKWIKKRIRRLKRQRKKERGLI Q8U232 50S ribosomal protein L7Ae Pyrococcus abyssi GE5 0.013442678 3 LEVO MAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYV PSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVRELMK P62008 30S ribosomal protein S19 Pyrococcus abyssi GE5 0.015307318999999998 1 LEVO MARKEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLT IYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGATRSSMFVAVK Q9V1T9 30S ribosomal protein S13 Pyrococcus abyssi GE5 0.016992912 1 LEVO MADFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVAHGIPRWAVN RPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSRKKK Q9V1A0 Large ribosomal subunit protein uL2 Pyrococcus abyssi GE5 0.02620243 1 LEVO MGKSLIQQRRGKGSPTFRSPSHRFRGAVKYIPLNYTQDKTLRGVVEEIMHDPGRTAPVARVRFENGMEKLIIAPEGLLVG QEIYIGPDAPIAIGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSREKDKVIVQLPSGELKAFNPNCRATIG VVAGGGRLEKPLVKAGKAYYKYKARNRFWPTPRGVKMNAVNHPFGGKEHHPGKPTTTSRRAPPGRKVGHIAARRTGRRK Q9V1T8 Large ribosomal subunit protein uL30 Pyrococcus abyssi GE5 0.017745030999999998 1 LEVO MAKLAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETLAKLIRKRGRLIGNKPV TDEYVKEKLGMTIEEFAQKVINGEMSLKDLPNLKPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINDLIERML Q9V1V6 Large ribosomal subunit protein uL18 Pyrococcus abyssi GE5 0.023308918 1 LEVO MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNT PSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFPEDYRIRGEHIAEYARMLKEQD EEKFRRQFGGYLEKGLDPEKLPEHFDEVKARIIEKFESEGARE Q9V1V4 Large ribosomal subunit protein uL3 Pyrococcus abyssi GE5 0.040928184 1 LEVO MGKVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETEVRMLGFAGYKAGMTHILMIDDEPGLTNGKEIFMPVTIIETPPLRV FGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRKFTFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEV RALVATQPWVIKLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRA HKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLVIDGNEIEITPKGGFPHYGIVRSDFMMI AGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESKQ Q9V1T5 Large ribosomal subunit protein eL14 Pyrococcus abyssi GE5 0.008913618 2 LEVO MPAIDVGRIAVIIAGRRAGQKCVIVDIIDKNFVLVTGAGLNKVKRRRMNIKHLEPLPEKIDIPRGASDEEVKAALEKAGI SL Q9UZJ5 Large ribosomal subunit protein uL15 Pyrococcus abyssi GE5 0.016360109 1 LEVO MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGKRGFSRPPEVQREVRTVTLKS IDENLDELLQKGIAYEEEGKIIVDTTQFADKVLGTGKITKPLVIKARAFSSKAEEKIKAAGGEAVLV Q9V1V7 Large ribosomal subunit protein eL39 Pyrococcus abyssi GE5 0.006316794 1 LEVO MARNKPLAKKLRLAKAMKQNRRVPVWVIVKTNRRVLTHPKRRHWRRTKLKE Q9UYI8 Large ribosomal subunit protein uL24 Pyrococcus abyssi GE5 0.014420074 1 LEVO MRLNSKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEGKVVEVDLKRYRIYVEG ATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRAG Q9V1U7 Large ribosomal subunit protein eL32 Pyrococcus abyssi GE5 0.015660749999999998 1 LEVO MDEKEFKRLLRVRARLKRKKPRFLRQEWWRYPKFKNDPKWRRPKGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYE EVLIHNVKELEKLDPKRQAARIAHTVGKKKRIEILKRAQELGIKVLNPQL Q9V1V2 Large ribosomal subunit protein eL37 Pyrococcus abyssi GE5 0.007321802 1 LEVO MSSGTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKKWKKKKNVH P62004 Large ribosomal subunit protein uL5 Pyrococcus abyssi GE5 0.021549169999999996 1 LEVO MAITIPNREEILADWEAHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIAVKV TLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKI PTRHKLTKEEGMVYMMEEFGVEIVEEEG Q9V1U9 Large ribosomal subunit protein eL31 Pyrococcus abyssi GE5 0.011052216 1 LEVO MPIKPGEEVIFTVPIRKIKKIVPRWKRAPRAVKFVREFVARHAKAQEVIISTKVNEKIWERGIEKPPSRLRVKVKVEEED RDGKKVRIAYVDLA Q9UYI7 Large ribosomal subunit protein uL23 Pyrococcus abyssi GE5 0.009893717 1 LEVO MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITPKGEKKAYVKLKPEYSASEIA ARLGLF Q9V1T7 Large ribosomal subunit protein uL29 Pyrococcus abyssi GE5 0.008182881 1 LEVO MKPSEIREMSIEEIDAKIRELRLQLAKERGMLTMGTSLENPMVIRNLRRDIARLLTIKREKLREMRKK Q9V1U2 Large ribosomal subunit protein eL43 Pyrococcus abyssi GE5 0.009005873999999999 1 LEVO MSGTKKVGSAGRFGPRYGLKIRRRVAAVEAKMRQKHVCPVCGRRAVRRISTGIWQCKKCGAIFAGGAYLPVTPAGKVAKR VVE Q9V202 Large ribosomal subunit protein uL13 Pyrococcus abyssi GE5 0.016317335 1 LEVO MRIINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIR GMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEAHVSRLSRPKYVTVGEVAKFLGGKF Q9V196 Large ribosomal subunit protein eL21 Pyrococcus abyssi GE5 0.011408472999999999 1 LEVO MVQKAHSFRRKTRKKLRKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGDAYIVEVPDG NKVKTLFIHPVHLRPQK Q9UZP1 Large ribosomal subunit protein eL19 Pyrococcus abyssi GE5 0.018240934 1 LEVO MKTLKMQRRVAAELLKCGENRIWIDPERVDDVASAITREDIRRLIKEGVIKKKPVKGQSRYRARIRHEQKKKGRHRGPGS RKGKKTARMGKKELWIKTIRALRKELRKLKEQKKIDRRTYRMLYIRAKGGQFKSKHQLYMFLEEHNLLKKR Q9V1V3 Large ribosomal subunit protein eL24 Pyrococcus abyssi GE5 0.008135623 1 LEVO MARWNVCSYCGKPFEPGTGKMFVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEARLQRGIRK Q9V0W3 Large ribosomal subunit protein eL42 Pyrococcus abyssi GE5 0.01127456 1 LEVO MKYPKQIRTYCPFCKRHTIHKVERVKKRPRSELSAGQRRFRRILKGYGGFPRPKPEGREKPVKKLDLRFRCTVCGKAHTR GRGFRVKKFELVEV Q9UXZ2 Large ribosomal subunit protein uL4 Pyrococcus abyssi GE5 0.02875874 1 LEVO MKVKVFDLNGQPVDEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRYA AFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREI FKKLGIWDDIERAKEKTGIRAGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT VWTVSAIERLKEIYG Q9V1T6 Large ribosomal subunit protein uL6 Pyrococcus abyssi GE5 0.020736143 1 LEVO MPVDAWVREEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAIVRTFKAHINNMIK GVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPGVTVKVKGQEIIVEGIDKEAVGQTAANIEQATRI TKWDRRVFQDGIYIVEKAGKPITF Q9V1V1 Large ribosomal subunit protein eL30 Pyrococcus abyssi GE5 0.010751578999999999 1 LEVO MDLAFELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVV ASLAIVDPGESRILALAKR Q9V112 Large ribosomal subunit protein eL18 Pyrococcus abyssi GE5 0.013839259 1 LEVO MKRTGPTDPNLRRLIRYLRKKSNEEKVKIWKDIAWRLERPRRQRAEVNVSRINRYAKDGDMIVVPGSVLGAGKIEKKVIV AAWKFSETARRKIEEAGGEAITIEELIKRNPKGSGVIIME Q9V197 Large ribosomal subunit protein eL15 Pyrococcus abyssi GE5 0.022657898 1 LEVO MGMYKYIREAWKSPKKSYVGQLLKQRMIKWRREPAVVRIERPTRLDRARALGYQAKQGYVIVRVRVRRGGRKRPRWKGGR KPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFR GLTSAGKKGRGLRNKGKGAEKIRPSIRANEGKGK Q9V0D2 Large ribosomal subunit protein uL22 Pyrococcus abyssi GE5 0.017834744 1 LEVO MGRRFDYSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRYNDSQGHKPGKGFGP GRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVLRGWYPRAFGRPTPFNEQTTHIEVVVEEVRR Q9V1U0 Large ribosomal subunit protein eL34 Pyrococcus abyssi GE5 0.01093541 1 LEVO MKPMYRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKTKKRPERPYPHLCPKCMRRVM KEQVRAQIMKG Q9UZJ7 Large ribosomal subunit protein uL16 Pyrococcus abyssi GE5 0.020923335999999997 1 LEVO MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMGNPAGDFEFEVALHVSQPVQIRQNALEAARQQVNRYLQKNVGRS NYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKVLSIRVNRQHLKFAIEGARRAAMKFPVKC YYRIYDKEGNDVTTKILSQGL Q9UYU9 Large ribosomal subunit protein eL40 Pyrococcus abyssi GE5 0.005900038999999999 1 LEVO MARFPEAEARIFKKYICLRCGATNPWGAEKCRKCGYKRLRPKAREPRGGGR P62006 Large ribosomal subunit protein eL33 Pyrococcus abyssi GE5 0.009755602 1 LEVO MRIKGVVLSYRRSKENQHTNVMIIKPLNVNSREEASKLIGRLVIWKSPSGKLLKGKIVRVHGTKGAVRARFEKGLPGQAL GDYVEII Q9V1P2 Large ribosomal subunit protein uL14 Pyrococcus abyssi GE5 0.015318956 1 LEVO MAKKGAGATRGITPVRPTRAIPVGAYLTVADNSGAKVIQVIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRA VIIRQRKEYRRLDGMRIKFEDNAAVIVTPEGVPRGTEIRGPVAREAAERWVRIGSIASIIV Q9V1U6 Large ribosomal subunit protein eL20 Pyrococcus abyssi GE5 0.009364035 1 LEVO MNVKVFRVSGYFEKNGRKFKFTKEYRALKEEHVKELVYSDIGSKHKVKRRKIFIKEIKEIRPEEAEDIVVRRLSLEL Q9UYI5 C2H2-type domain-containing protein Pyrococcus abyssi GE5 0.007795480999999999 1 LEVO MVRLKAIIVRDRDGEEFLRCPRCGMVFKRRKDYIKHVNKAHGWLFGRGKPKGKRLKKKYSKLLSQ G8ZKB7 Dehydrogenase Pyrococcus abyssi GE5 0.044583811999999994 1 LEVO MVGIQVQEVMTDRYAKIDINAPLSEAIGIIEKEDPDLILVFDDNVYKGVLTQDLIIRSHLKWDPTKAKVRDVYKPAPVVK PTDDLSHAAKLLLETDLRSLPVGENKAEILGVISDMALLERVVAEEFGKRKVEEFMTKDVITLGPDDTVAKALATMRDHG ISRIPVVDEEGKLEGLVTLHDLIIRFIKPRFKAQYGELAGEKIPPFSMKLREAMIKGVITIMPEATIREAVSTMKDNNID GLVVVDENNKVVGILTVKDLLLPISRMVEKEARFYLQLGGDASALSEFTRERIINDIKRFVDGYADLLGNEGIIYLYIRR FNEKFRGVHLYQARMRVVTDRGVFIARGETWGAIQAVHDAIRAIERQLLQKAELERDIRYAKRFIEKLELWR Q9UYR4 MAGNESIUM ION 2.4305e-05 244 MG ZINC ION 6.5409e-05 13 ZN singleParticle particle 7.5 ETHANE TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.3 0.8 GATAN K3 BIOQUANTUM (6k x 4k) 40.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 7ZAG 2.1 FSC 0.143 CUT-OFF PHENIX 207000 ANGULAR RECONSTITUTION MAXIMUM LIKELIHOOD emd_55138.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 302.04 302.04 302.04 90.0 90.0 90.0 X Y Z -0.005545682 0.016038943 0.00012181727 0.0007522301 0.83900005 0.83900005 0.83900005 0.00125 AUTHOR ::::EMDATABANK.org::::EMD-55138:::: Other other emd_55138_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 302.04 302.04 302.04 90.0 90.0 90.0 X Y Z -0.009675236 0.02433493 0.000121544515 0.0009572172 0.83900005 0.83900005 0.83900005 AUTHOR ::::EMDATABANK.org::::EMD-55138:::: emd_55138_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 302.04 302.04 302.04 90.0 90.0 90.0 X Y Z -0.005429791 0.018839708 0.0001216348 0.0008602833 0.83900005 0.83900005 0.83900005 AUTHOR ::::EMDATABANK.org::::EMD-55138:::: emd_55138_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 302.04 302.04 302.04 90.0 90.0 90.0 X Y Z -0.006051356 0.019548932 0.00012199976 0.00085979764 0.83900005 0.83900005 0.83900005 AUTHOR ::::EMDATABANK.org::::EMD-55138::::