REL PDBj RCSB PDBj 2012-09-28 2012-12-12 2013-01-16 2013-03-06 Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM Guo Q Goto S Chen Y Muto A Himeno H Deng H Lei J Gao N Ribosome biogenesis, 30S subunit assembly, RimM Guo Q Goto S Chen Y Feng B Xu Y Muto A Himeno H Deng H Lei J Gao N Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM and general features of the assembly process. NUCLEIC ACIDS RES. 41 2609 2620 2013 23293003 doi:10.1093/nar/gks1256 3j2g FULLOVERLAP immature ribosomal small subunit from rimm gene deleted E.coli strain treated with RimM in vitro immature ribosomal small subunit from rimm gene deleted E.coli strain treated with RimM in vitro 1 0.8 0.8 small subunit from rimm gene deleted E.coli strain false Escherichia coli 0.8 0.8 ribosome-prokaryote: SSU 30S RimM Escherichia coli 1 true Escherichia coli BL21 pET28b singleParticle particle 7.5
150 mM NH4Cl,10mM Tris-HCL,10mM MgCl2
 ETHANE 100 FEI VITROBOT MARK IV Blot for 1 seconds before plunging FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.5 3.8 59000.0 GATAN LIQUID NITROGEN 2012-01-01 FEI EAGLE (4k x 4k) 20
This is a classification volume (No. 4) using ML3D methods.
Weiner filter
 OTHER 16.5 FSC 0.5 CUT-OFF SPIDER 25631 emd_5509.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 125 125 125 -62 -62 -62 125 125 125 375.0 375.0 375.0 90.0 90.0 90.0 X Y Z -7.20246601 4.70446777 -4.3769269 0.60054141 3.00 3.00 3.00 -2.3 AUTHOR The map has been normalized to N(0,1)
::::EMDATABANK.org::::EMD-5509::::
 3OFA A FLEXIBLE FIT MDFF
Protocol: Initial local fitting was done using Chimera and then MDFF was used for flexible fitting. ref: Trabuco, L.G., Villa, E., Mitra, K., Frank, J. and Schulten, K. (2008) Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. Structure, 16, 673-683
Cross-correlation REAL