Chromosomal Passenger Complex in complex with H3T3ph Nucleosome (Class0)

2025-11-26 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY DATABASE_REFERENCES citation citation_author em_admin _citation.country _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _em_admin.last_update DATABASE_REFERENCES citation em_admin _citation.journal_volume _citation.page_first _citation.page_last _em_admin.last_update PDBe PDBe 2025-08-28 2025-10-01 2025-10-01 2025-11-26 European Research Council (ERC) European Union Chromosomal Passenger Complex in complex with H3T3ph Nucleosome (Class0) Gireesh A Abad MA Sotelo-Parrilla P Jeyaprakash AA Nucleosome-binding DNA-binding Stabilising Nucleosome Acidic-patch interaction, CELL CYCLE Gireesh A Abad MA Nozawa RS Sotelo-Parrilla P Dury LC Likhodeeva M Wear M Spanos C Peralta CC Rappsilber J Hopfner KP Wilson MD Vanderlinden W Hirota T Jeyaprakash AA Nucleosome interaction of the CPC secures centromeric chromatin integrity and chromosome segregation fidelity. Embo J. UK 44 6556 6597 2025 41145915 doi:10.1038/s44318-025-00594-y 1460-2075 0897 EMJODG 9si9 FULLOVERLAP PDB 9SI3 unspecified

This deposition is an alternate class for the same complex

EMDB EMD-54926 associated EM volume

Chromosomal Passenger Complex in complex with H3T3ph Nucleosome Chromosomal Passenger Complex in complex with H3T3ph Nucleosome 0 1 2 3 4 5 6 7 8 9 10

Cryo-EM Structure of CPC in complex with H3T3ph Nucleosome (Class 0)

Homo sapiens .341 DNA (147-MER) synthetic construct 0.045644069999999995 1 (DA)(DC)(DA)(DG)(DG)(DA)(DT)(DG)(DT)(DA)(DT)(DA)(DT)(DA)(DT)(DG)(DT)(DG)(DA)(DC) (DA)(DC)(DG)(DT)(DG)(DC)(DC)(DT)(DG)(DG)(DA)(DG)(DA)(DC)(DT)(DA)(DG)(DG)(DG)(DA) (DG)(DT)(DA)(DA)(DT)(DC)(DC)(DC)(DC)(DT)(DT)(DG)(DG)(DC)(DG)(DG)(DT)(DT)(DA)(DA) (DA)(DA)(DC)(DG)(DC)(DG)(DG)(DG)(DG)(DG)(DA)(DC)(DA)(DG)(DC)(DG)(DC)(DG)(DT)(DA) (DC)(DG)(DT)(DG)(DC)(DG)(DT)(DT)(DT)(DA)(DA)(DG)(DC)(DG)(DG)(DT)(DG)(DC)(DT)(DA) (DG)(DA)(DG)(DC)(DT)(DG)(DT)(DC)(DT)(DA)(DC)(DG)(DA)(DC)(DC)(DA)(DA)(DT)(DT)(DG) (DA)(DG)(DC)(DG)(DG)(DC)(DC)(DT)(DC)(DG)(DG)(DC)(DA)(DC)(DC)(DG)(DG)(DG)(DA)(DT) (DT)(DC)(DT)(DC)(DC)(DA)(DG) DNA DNA (147-MER) synthetic construct 0.045105727 1 (DC)(DT)(DG)(DG)(DA)(DG)(DA)(DA)(DT)(DC)(DC)(DC)(DG)(DG)(DT)(DG)(DC)(DC)(DG)(DA) (DG)(DG)(DC)(DC)(DG)(DC)(DT)(DC)(DA)(DA)(DT)(DT)(DG)(DG)(DT)(DC)(DG)(DT)(DA)(DG) (DA)(DC)(DA)(DG)(DC)(DT)(DC)(DT)(DA)(DG)(DC)(DA)(DC)(DC)(DG)(DC)(DT)(DT)(DA)(DA) (DA)(DC)(DG)(DC)(DA)(DC)(DG)(DT)(DA)(DC)(DG)(DC)(DG)(DC)(DT)(DG)(DT)(DC)(DC)(DC) (DC)(DC)(DG)(DC)(DG)(DT)(DT)(DT)(DT)(DA)(DA)(DC)(DC)(DG)(DC)(DC)(DA)(DA)(DG)(DG) (DG)(DG)(DA)(DT)(DT)(DA)(DC)(DT)(DC)(DC)(DC)(DT)(DA)(DG)(DT)(DC)(DT)(DC)(DC)(DA) (DG)(DG)(DC)(DA)(DC)(DG)(DT)(DG)(DT)(DC)(DA)(DC)(DA)(DT)(DA)(DT)(DA)(DT)(DA)(DC) (DA)(DT)(DC)(DC)(DT)(DG)(DT) DNA Histone H3.2 Xenopus laevis 0.01530393 1 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LEVO ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT DLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA P84233 Histone H4 Xenopus laevis 0.011263230999999999 2 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LEVO SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT VTAMDVVYALKRQGRTLYGFGG P62799 Histone H2A type 1 Homo sapiens 0.013990342 2 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LEVO SGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIP RHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK P0C0S8 Histone H2B type 1-J Homo sapiens 0.013804045 2 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LEVO PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRL AHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK P06899 Borealin Homo sapiens 0.031376041 2 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LEVO MAPRKGSSRVAKTNSLRRRKLASFLKDFDREVEIRIKQIESDRQNLLKEVDNLYNIEILRLPKALREMNWLDYFALGGNK QALEEAATADLDITEINKLTAEAIQTPLKSAKTRKVIQVDEMIVEEEEEEENERKNLQTARVKRCPPSKKRTQSIQGKGK GKRSSRANTVTPAVGRLEVSMVKPTPGLTPRFDSRVFKTPGLRTPAAGERIYNISGNGSPLADSKEIFLTVPVGGGESLR LLASDLQRHSIAQLDPEALGNIKKLSNRLAQICSSIRTHK Q53HL2 Baculoviral IAP repeat-containing protein 5 Homo sapiens 0.016414736 1 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LEVO MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKH SSGCAFLSVKKQFEELTLGEFLKLDRERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAMD O15392 Inner centromere protein Homo sapiens 0.10562034399999999 1 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LEVO MGTTAPGPIHLLELCDQKLMEFLCNMDNKDLVWLEEIQEEAERMFTREFSKEPELMPKTPSQKNRRKKRRISYVQDENRD PIRRRLSRRKSRSSQLSSRRLRSKDSVEKLATVVGENGSVLRRVTRAAAAAAAATMALAAPSSPTPESPTMLTKKPEDNH TQCQLVPVVEIGISERQNAEQHVTQLMSTEPLPRTLSPTPASATAPTSQGIPTSDEESTPKKSKARILESITVSSLMATP QDPKGQGVGTGRSASKLRIAQVSPGPRDSPAFPDSPWRERVLAPILPDNFSTPTGSRTDSQSVRHSPIAPSSPSPQVLAQ KYSLVAKQESVVRRASRRLAKKTAEEPAASGRIICHSYLERLLNVEVPQKVGSEQKEPPEEAEPVAAAEPEVPENNGNNS WPHNDTEIANSTPNPKPAASSPETPSAGQQEAKTDQADGPREPPQSARRKRSYKQAVSELDEEQHLEDEELQPPRSKTPS SPCPASKVVRPLRTFLHTVQRNQMLMTPTSAPRSVMKSFIKRNTPLRMDPKCSFVEKERQRLENLRRKEEAEQLRRQKVE EDKRRRLEEVKLKREERLRKVLQARERVEQMKEEKKKQIEQKFAQIDEKTEKAKEERLAEEKAKKKAAAKKMEEVEARRK QEEEARRLRWLQQEEEERRHQELLQKKKEEEQERLRKAAEAKRLAEQREQERREQERREQERREQERREQERREQERQLA EQERRREQERLQAERELQEREKALRLQKEQLQRELEEKKKKEEQQRLAERQLQEEQEKKAKEAAGASKALNVTVDVQSPA CTSYQMTPQGHRAPPKINPDNYGMDLNSDDSTDDEAHPRKPIPTWARGTPLSQAIIHQYYHPPNLLELFGTILPLDLEDI FKKSKPRYHKRTSSAVWNSPPLQGARVPSSLAYSLKKH Q9NQS7 H3.4 histone Homo sapiens 0.015383909999999999 1 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LEVO AR(TPO)KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQ DFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA S4RAZ3 singleParticle particle .115 8.0 ETHANE 95 283.15 LEICA PLUNGER TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.5 2.6 FEI FALCON IV (4k x 4k) 40.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 2.86 FSC 0.143 CUT-OFF cryoSPARC 73078 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_54926.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 279.168 279.168 279.168 90.0 90.0 90.0 X Y Z -0.34895706 0.9061632 -0.00038022202 0.029161524 0.727 0.727 0.727 0.061 AUTHOR ::::EMDATABANK.org::::EMD-54926:::: emd_54926_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 279.168 279.168 279.168 90.0 90.0 90.0 X Y Z -0.008050768 1.8176651 0.0023188628 0.036435697 0.727 0.727 0.727 AUTHOR ::::EMDATABANK.org::::EMD-54926:::: emd_54926_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 279.168 279.168 279.168 90.0 90.0 90.0 X Y Z -0.65114003 1.1160488 0.00058810133 0.052756008 0.727 0.727 0.727 AUTHOR ::::EMDATABANK.org::::EMD-54926:::: emd_54926_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 279.168 279.168 279.168 90.0 90.0 90.0 X Y Z -0.5776824 1.1266305 0.0006270734 0.052481316 0.727 0.727 0.727 AUTHOR ::::EMDATABANK.org::::EMD-54926::::