REL RCSB RCSB RCSB 2012-08-09 2013-04-03 2013-04-03 2013-04-17 Cryo-electron microscopy reconstruction of the Enterovirus 71 A-particle Shingler KL Yoder JL Carnegie MS Ashley RE Makhov AM Conway JF Hafenstein S Enterovirus 71, EV71, A-particle, 135S Shingler KL Yoder JL Carnegie MS Ashley RE Makhov AM Conway JF Hafenstein S The enterovirus 71 A-particle forms a gateway to allow genome release: a cryoEM study of picornavirus uncoating. PLOS PATHOG. 9 e1003240 e1003240 2013 23555253 doi:10.1371/journal.ppat.1003240 3j22 FULLOVERLAP Enterovirus 71 A-Particle Enterovirus 71 A-Particle
The sample was purified mature virus heated in solution.
icosahedral virus 1 7 7 Calculation Human enterovirus 71
purified virus in solution
Human enterovirus 71 Homo sapiens VERTEBRATES 7 7 single capsid shell 300 1 VIRION SEROTYPE false false EV71, Hand foot and mouth disease virus singleParticle particle 0.1 7.5
10 mM Tris-HCl, 20 mM NaCl, 5 mM MgCl2
glow discharged holey carbon Quantifoil electron microscopy grids
 ETHANE-PROPANE MIXTURE 95 76 FEI VITROBOT MARK III FEI TECNAI F20 SPOT SCAN BRIGHT FIELD FIELD EMISSION GUN 200 2 1.73 4.28 50000.0 50000.0 GATAN LIQUID NITROGEN 95 CTFFIND3 (EMAN) 2012-04-17 KODAK SO-163 FILM NIKON SUPER COOLSCAN 9000 6.35 40 15
The particles were selected using an automatic selection program (EMAN).
auto3DEM
 OTHER 6.3 FSC 0.5 CUT-OFF EMAN2, auto3DEM
A single data set was used for the reconstruction
11436 emd_5465.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 351 351 351 -175 -175 -175 351 351 351 445.77 445.77 445.77 90.0 90.0 90.0 X Y Z -4.72561073 6.55992079 0.0 0.99999994 1.27 1.27 1.27 1.0 AUTHOR Reconstruction of the Enterovirus 71 A-particle, produced by heat treating mature capsids in isotonic solution.
::::EMDATABANK.org::::EMD-5465::::
 3VBU A B C RIGID BODY FIT Chimera, Situs
Protocol: rigid body. One protomer was fit in Chimera, used to generate a full crystal map, then docked as a rigid body using Situs into the cryoEM density map.
correlation coefficient REAL
emd_5465.tif