2026-08-12 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY PDBe PDBe 2025-07-24 2026-08-12 2026-08-12 2026-08-12 Israel Science Foundation 569/17 Israel Universal Photosystem II Intermediate with Light-Dependent Water-Ferrocyanide Oxydo-reductase activity from Pisum sativum Nelson N Klaiman D Fadeeva M Kandiah E Higher plants, PSII, Pisum sativum, membrane protein, Cryo-EM, PHOTOSYNTHESIS, assembly intermediate, water-ferrocyanide oxido-reductase. Nelson N Klaiman D Fadeeva M Universal Photosystem II Intermediate with Light-Dependent Water-Ferrocyanide Oxydo-reductase activity from Pisum sativum To Be Published 0353 9s3e FULLOVERLAP EMDB EMD-54531 associated EM volume
Universal Photosystem II Intermediate with Light-Dependent Water-Ferrocyanide Oxydo-reductase activity from Pisum sativum
 Photosystem II Intermediate Photosystem II Intermediate 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 Pisum sativum 0.35 Photosystem II protein D1 Pisum sativum 0.036972074 1 LEVO ENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIG LHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSD GMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVA AHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEV MHERNAHNFPLDLA P06585 1.10.3.9 Photosystem II CP47 reaction center protein Pisum sativum 0.053157574 1 LEVO GLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWNIT GGTITNPGIWSYEGVAAAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLAGVACFGFGAFHVTGL FGPGIWVSDPYGLTGRVQSVNPAWGVDGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSS IAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVGGGLVENQSLSEAWSKIPEKLAFYDYIGNNPAK GGLFRAGSMDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESKYSVEQVGVIVEF YGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAG I D5MAL6 Photosystem II CP43 reaction center protein Pisum sativum 0.049174273 1 LEVO GRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGE VIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGSFLLVFKAFYFGG IYDTWAPGGGDVRKITNFTLSPSILFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRAL VWSGEAYLSYSLGALAVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRS PTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRS WLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN P06004 Photosystem II D2 protein Pisum sativum 0.038106496 1 LEVO DLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLL WGPEAQGDLTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPS FGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRF WSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMATQ DQPHENLIFPEEVLPRGNAL P06006 1.10.3.9 Cytochrome b559 subunit alpha Pisum sativum 0.008624707 1 LEVO RSFADIITSIRYWIIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTETRQGIPLITGRFDSLEQLDEFSRS P13554 Cytochrome b559 subunit beta Pisum sativum 0.0033960349999999995 1 LEVO FTVRWLAVHGLAVPTVFFLGSISAMQFIQR P62096 Photosystem II reaction center protein H Pisum sativum 0.0064556069999999995 1 LEVO GPRRTAVGDLLKPLNSEYGKVAPGWGTTPLMGIAMALFAVFLSIILEIYNSSLLLDQISM Q9XQR3 Photosystem II reaction center protein I Pisum sativum 0.0037694969999999997 1 LEVO MLTLKLFVYTIVIFFVSLFIFGFLSNDPGRNPG A0A2S1CE74 Photosystem II reaction center protein J Pisum sativum 0.003598264 1 LEVO GRIPLWIIGTVAGIVVIGLIGLFFYGSYSGLGSSL P13555 Photosystem II reaction center protein K Pisum sativum 0.004287155 1 LEVO KLPEAYAFLNPIVDFMPVIPLLFFLLAFVWQAAVSFR D5MAJ8 Photosystem II reaction center protein L Pisum sativum 0.004137671999999999 1 LEVO SNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN P60147 Photosystem II reaction center protein M Pisum sativum 0.003066779 1 LEVO NILAFIATALFILVPTAFLLIIYVKTVS P69529 Oxygen-evolving enhancer protein 1, chloroplastic Pisum sativum 0.026554645999999998 1 LEVO EGAPKRLTFDEIQSKTYLEVKGTGTANQCPTIDGGVDSFSFKPGKYNAKKLCLEPTSFTVKSEGVTKNTPLAFQNTKLMT RLTYTLDEIEGPFEVSADGSVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPDSFSGEFLVPSYRGSSFLDPK GRGASTGYDNAVALPAGGRGDEEELGKENNKSAASSKGKITLSVTQTKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQG VWYAQLES P14226 Oxygen-evolving enhancer protein 2, chloroplastic Pisum sativum 0.020287493999999996 1 LEVO AYGEAANVFGKAKTNTDYLPYNGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEF LSKVDYLLGKQAFFGQTDSEGGFDTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVKDGKLYICK AQAGDKRWFKGARKFVEDTASSFSVA P16059 Oxygen-evolving enhancer protein 3 Pisum sativum 0.016398898000000002 1 LEVO EAIPIKVGGPPPLSGGLPGTLNSDEARDLKLPLKERFFIQPLAPTEAAARTKESAKEIVAAKKFIDQKAWPFLQNDLRLR AGYLRYDLKTIISSKPKDQKQSLKELTDKLFQDISNLDHAAKIKSPSEAEKYYAIAVSTLNDVLSKIA Q7Y1T5 Photosystem II reaction center protein T Pisum sativum 0.0034621889999999996 1 LEVO MEALVYTFLLVSTLGIIFFAIFFREPPKVP Q8HS25 PSII 6.1 kDa protein Pisum sativum 0.005198879 1 LEVO LVDDRMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFIYASGLDED A0A9D4W3H0 Ultraviolet-B-repressible protein Pisum sativum 0.0035441229999999997 1 LEVO ATVSPSLKNFLLSIVSGGVVVTAILGAVIGVSNFDP A0A9D4X981 Photosystem II 5 kDa protein, chloroplastic Pisum sativum 0.003080648 1 LEVO EPKRGSPEAKKAYAPVCVTMPTARICRN A0A9D4VSA9 CA-MN4-O5 CLUSTER 0.00033982699999999996 1 OEX FE (II) ION 5.5845e-05 1 FE2 CHLORIDE ION 3.5453e-05 2 CL CHLOROPHYLL A 0.000893489 35 CLA PHEOPHYTIN A 0.0008712 2 PHO BETA-CAROTENE 0.000536873 8 BCR 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL 0.0007951159999999999 1 SQD 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE 0.000749201 2 PL9 BICARBONATE ION 6.1017e-05 1 BCT 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE 0.0007871579999999999 6 LMG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 0.00072297 6 LHG DIGALACTOSYL DIACYL GLYCEROL (DGDG) 0.0009492989999999999 4 DGD PROTOPORPHYRIN IX CONTAINING FE 0.000616487 1 HEM water 1.8015e-05 778 HOH singleParticle particle 2 6.5 Quantifoil R1.2/1.3 COPPER 200 GLOW DISCHARGE ETHANE 90 288 LEICA EM GP
Chlorophyll concentration
 TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 0.7000000000000001 2.0 165000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON IV (4k x 4k) 1 24215 2.2 50.0 1 7825226 CTFFIND 4 PHASE FLIPPING AND AMPLITUDE CORRECTION 6YP7 1 C1 FOURIER SPACE 2.1 FSC 0.143 CUT-OFF RELION 4.0 323534 MAXIMUM LIKELIHOOD UCSF Chimera MAXIMUM LIKELIHOOD PHENIX 6 71300.0 RELION 4.0 emd_54531.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 263.16 263.16 263.16 90.0 90.0 90.0 X Y Z -0.058739964 0.14679728 0.00016581279 0.004950842 0.731 0.731 0.731 0.02 AUTHOR emd_54531_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 263.16 263.16 263.16 90.0 90.0 90.0 X Y Z -0.00721504 0.034240104 0.00016605195 0.0015307685 0.731 0.731 0.731 AUTHOR emd_54531_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 263.16 263.16 263.16 90.0 90.0 90.0 X Y Z -0.0070518875 0.035343394 0.00016557348 0.0015307821 0.731 0.731 0.731 AUTHOR