REL RCSB RCSB RCSB 2012-07-27 2012-10-17 2012-10-17 2012-10-24 A Tail-like Assembly at the Portal Vertex in Intact Herpes Simplex Type-1 Virions Schmid MF Hecksel CW Rochat RH Bhella D Chiu W Rixon FJ HSV-1, cryo-ET, cryo-EM, Electron cryo-microscopy, Electron cryo-tomography, PVAT, MSA, Melon Ball, Single Particle Tomography, Sub-tomogram Averaging Schmid MF Hecksel CW Rochat RH Bhella D Chiu W Rixon FJ A tail-like assembly at the portal vertex in intact herpes simplex type-1 virions. PLOS PATHOG. 8 e1002961 e1002961 2012 23055933 doi:10.1371/journal.ppat.1002961 Herpes Simplex Virus type 1 (HSV-1) virion. Herpes Simplex Virus type 1 (HSV-1) virion.
Frozen hydrated HSV-1 Virions
1 1 200 Human herpesvirus 1
Frozen hydrated virions
Human herpesvirus 1 Homo sapiens VERTEBRATES 200 1250 16 VIRION STRAIN true false Herpes Simplex Virus type 1 subtomogramAveraging particle 7.2
170mM NaCl, 3.4mM KCl, 10mM Na2HPO4, 1.8mM KH2PO4, 4.9mM MgCl2, 6.8mM CaCl2
Quantifoil R 2/2 holey carbon film on a 200 mesh copper grid, glow discharged in air
 ETHANE 95 120 FEI VITROBOT MARK IV Manual blotting JEOL 2200FS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2 4.0 4.0 20000.0 28195.0 GATAN LIQUID NITROGEN 100 Objective lens astigmatism was corrected at 100,000 times magnification Omega 25.0 30.0 2008-05-23 GATAN ULTRASCAN 4000 (4k x 4k) OTHER 15 11 88 16. Gatan 914 -60 60
Multivariate Statistical Analysis (MSA) was used to classify a unique vertex in the capsid shell for alignment and averaging. Further details provided in manuscript. Average number of projections used in the 3D reconstructions: 214.
OTHER 60.0 FSC 0.5 CUT-OFF IMOD, tomohunter
Final map is the average of 214 subvolumes
 emd_5452.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 350 350 350 -175 -175 -175 350 350 350 3780.0 3780.0 3780.0 90.0 90.0 90.0 X Y Z -7.47709465 11.43591309 -0.00842042 0.98621404 10.8 10.8 10.8 4.56 AUTHOR Reconstruction of Herpes Simplex Virus type 1 (HSV-1) using Multivariate Statistical Analysis
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