2026-03-18 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY DATABASE_REFERENCES citation citation_author em_admin _citation.country _citation.journal_abbrev _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _em_admin.last_update EXPERIMENTAL_SUMMARY citation citation_author em_admin _citation.country _citation.journal_abbrev _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _em_admin.last_update PDBe PDBe 2025-06-26 2026-02-04 2026-02-04 2026-03-18 Other government United Kingdom Other private United Kingdom Heptameric AAV2 Rep40-dsDNA (ITR) complex in presence of ATPgS Rouse SL Bubeck D Barritt JD Xu V Wake M Helicase, Adeno-associated Virus, AAA+ ATPase, DNA BINDING PROTEIN Xu V McInnes A Wake M Acebron-Garcia-de-Eulate M Barritt JD Bubeck D Rouse SL Structural basis for Rep-mediated adeno-associated virus packaging. Cell Rep US 45 117044 117044 2026 41790558 doi:10.1016/j.celrep.2026.117044 2211-1247 EMD-54181 consensus EM volume
Consensus map of Heptameric Rep40-dsDNA (ITR) complex in presence of ATPgS
 EMD-54182 focused EM volume
Focus/constituent map of 3/7 subunits of Heptameric Rep40-dsDNA (ITR) complex in presence of ATPgS
 EMD-54183 focused EM volume
Focus/constituent map of 4/7 subunits of Heptameric Rep40-dsDNA (ITR) complex in presence of ATPgS
 9rqt FULLOVERLAP EMDB EMD-54181 consensus EM volume
Consensus map of Heptameric Rep40-dsDNA (ITR) complex in presence of ATPgS
 EMDB EMD-54182 focused EM volume
Focus/constituent map of 3/7 subunits of Heptameric Rep40-dsDNA (ITR) complex in presence of ATPgS
 EMDB EMD-54183 focused EM volume
Focus/constituent map of 4/7 subunits of Heptameric Rep40-dsDNA (ITR) complex in presence of ATPgS
 EMDB EMD-54184 associated EM volume
Heptameric AAV2 Rep40-dsDNA (ITR) complex in presence of ATPgS
 AAV2 Heptameric Rep40-dsDNA (ITR) in presence of ATPgS AAV2 Heptameric Rep40-dsDNA (ITR) in presence of ATPgS 0 1 2
Adeno-associated Virus 2 Replication protein 40 in complex with inverted-terminal-repeat DNA and ATP-gamma-S
adeno-associated virus 2 DNA (28-MER) DNA molecule 0.04469735899999999
dsDNA segment from full length AAV2 5' Inverted Terminal Repeat hairpin DNA: (5'->3') TTGGCCACTCCCTCTCTGCGCGCTCGCTCGCTCACTGAGGCCGGGCGACCAAAGGTCGCCCGACGCCCGGGCTTTGCCCGGGCGGCCTCAGTGAGCGAGCGAGCGCGCAGAGAGGGAGTGGCCAACTCCATCACTAGGGGTTCCT
1 (DT)(DT)(DG)(DG)(DC)(DC)(DA)(DC)(DT)(DC)(DC)(DC)(DT)(DC)(DT)(DC)(DT)(DG)(DC)(DG) (DC)(DG)(DC)(DT)(DC)(DG)(DC)(DT)(DC)(DG)(DC)(DT)(DC)(DA)(DC)(DT)(DG)(DA)(DG)(DG) (DC)(DC)(DG)(DG)(DG)(DC)(DG)(DA)(DC)(DC)(DA)(DA)(DA)(DG)(DG)(DT)(DC)(DG)(DC)(DC) (DC)(DG)(DA)(DC)(DG)(DC)(DC)(DC)(DG)(DG)(DG)(DC)(DT)(DT)(DT)(DG)(DC)(DC)(DC)(DG) (DG)(DG)(DC)(DG)(DG)(DC)(DC)(DT)(DC)(DA)(DG)(DT)(DG)(DA)(DG)(DC)(DG)(DA)(DG)(DC) (DG)(DA)(DG)(DC)(DG)(DC)(DG)(DC)(DA)(DG)(DA)(DG)(DA)(DG)(DG)(DG)(DA)(DG)(DT)(DG) (DG)(DC)(DC)(DA)(DA)(DC)(DT)(DC)(DC)(DA)(DT)(DC)(DA)(DC)(DT)(DA)(DG)(DG)(DG)(DG) (DT)(DT)(DC)(DC)(DT) DNA Protein Rep40 adeno-associated virus 2 0.04414892199999999
Latch-WTAAV2Rep40-TrB-3xFLAG-TEV-6xHis
7 Escherichia coli LEVO EQNKENQNPNSDAPVIRSKTSARYMELVGWLVDKGITSEKQWIQEDQASYISFNAASNSRSQIKAALDNAGKIMSLTKTA PDYLVGQQPVEDISSNRIYKILELNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWT NENFPFNDCVDKMVIWWEEGKMTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQP LQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWAKDHVVEVEHEFYVKKGGAKKRPAPSDADISEPKRVRESVAQPSTSDA EASINYADRLARGHSLGSLVPRGSGGGGSGGGGSGGGGSMDYKDHDGDYKDHDIDYKDDDDKGSENLYFQSHHHHHH Q89269 3.6.4.12 PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER 0.0005232469999999999 2 AGS MAGNESIUM ION 2.4305e-05 3 MG ADENOSINE-5'-DIPHOSPHATE 0.000427201 1 ADP singleParticle particle 0.8 7.8 200.0 NaCl Sodium Chloride 25.0 (HOCH2)*3CNH2 Tris 1.0 C9H15O6P TCEP 1.0 C3H8O3 Glycerol ETHANE 100 295.15 FEI VITROBOT MARK IV TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.6 2.4 105000.0 FEI TITAN KRIOS AUTOGRID HOLDER EPU 3.8.1 GATAN K3 (6k x 4k) 5760 4092 1.68 39.99 1 cryoSPARC 4.4.1 PHASE FLIPPING AND AMPLITUDE CORRECTION 2.88 FSC 0.5 CUT-OFF cryoSPARC 4.4.1
Composite map generated in phenix using 2 local maps (3-mer local map and 4-mer local map).
137594 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD cryoSPARC 4.4.1 emd_54184.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 297.0 297.0 297.0 90.0 90.0 90.0 Z Y X -22.697766999999999 59.453360000000004 0.013850825 1.1671793 0.825 0.825 0.825 4.87 AUTHOR AlphaFold in silico model ISOLDE 1.8